Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c12
         (139 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230...    27   2.8  
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123     26   4.8  
07_03_1095 + 23926977-23927657                                         25   6.4  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    25   6.4  
12_01_0301 - 2280215-2281154,2281271-2281338                           25   8.5  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    25   8.5  

>02_05_1200 -
           34922073-34922273,34922397-34922469,34922976-34923019,
           34923107-34923183,34923433-34923529,34923668-34924062,
           34926577-34926620,34926702-34926770,34926856-34926956,
           34927689-34927856,34927940-34928141,34928269-34928708,
           34928786-34928884,34929123-34929263
          Length = 716

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 135 CQSSVPPTQRCYPVNP 88
           C SS+PPTQ  Y  NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468


>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
          Length = 369

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 133 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQW 41
           P++ ATN T L C      ++  HSNY   W
Sbjct: 129 PDEEATNHTALPCPG-ELLVEEHHSNYGEPW 158


>07_03_1095 + 23926977-23927657
          Length = 226

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 123 VPPTQRCYPVNPCINIYSCY 64
           V P+QR Y  + C  +Y CY
Sbjct: 90  VKPSQRAYECSVCGKVYWCY 109


>03_02_0568 +
           9514715-9514944,9515174-9515300,9515529-9515684,
           9515765-9516102,9516191-9516329,9517083-9517152,
           9517201-9517307,9517387-9517437,9517549-9517660,
           9517783-9517869,9517958-9518133,9518479-9518586,
           9518654-9518812,9518888-9518971,9519053-9519258,
           9519565-9519666,9519768-9519877,9519963-9520114,
           9520380-9520548,9520841-9520878,9521963-9522571,
           9523314-9523784,9523786-9523871,9524396-9524906,
           9525388-9525412,9526001-9526051,9526228-9526301,
           9526412-9526534,9526667-9526738,9526924-9527020,
           9527174-9527283
          Length = 1649

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 130 EQRATNTTVLSCKSLHQHIQLLHS 59
           EQRA   + +SC  L + + +LHS
Sbjct: 83  EQRANVQSAISCDDLKREVTVLHS 106


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 117 PTQRCYPVNPCINIYSC 67
           PTQ C+     IN YSC
Sbjct: 119 PTQVCFAAEAMINTYSC 135


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 137 FARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 24
           F    C+  N ++          ++L  CN M+D+Y E
Sbjct: 832 FVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,843,783
Number of Sequences: 37544
Number of extensions: 47826
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)