Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c10
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 69 8e-13
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 61 2e-10
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 53 5e-08
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 52 1e-07
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 47 4e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 45 1e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 43 6e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 40 5e-04
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 40 5e-04
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 39 7e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 38 0.002
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 33 0.036
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.083
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 29 0.58
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 1.0
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 27 2.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 4.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 5.5
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 5.5
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 7.2
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 26 7.2
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 9.5
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 68.9 bits (161), Expect = 8e-13
Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 17/236 (7%)
Frame = -3
Query: 742 DVFDCAKCASTYETFKMLKQ-HMN-KHYSNYVCGKCGTAFATKRSLHSHRNVHKEGS-YK 572
D C+K K+ K+ H N K +S + G C F T++ L H VH++ Y
Sbjct: 56 DYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG-CDAQFYTQQHLERHIEVHRKPKPYA 114
Query: 571 CGY--CDKVFSNRPKKCYHEKLQHLGESNIS-KCQHCGAPFKSYYQRNQHLIRVHNDEAK 401
C + CD+ FS + H H Q C F + + H+ R H
Sbjct: 115 CTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIIS 174
Query: 400 YKCN----VCNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTG-- 239
Y C V ++ + S L HI+ H+ C+ CG +F + L+ H+V H
Sbjct: 175 YSCPHESCVGHEGFEKWSQLQNHIREAHVPS----CSICGRQFKTAAHLRHHVVLHQTTL 230
Query: 238 --ERIYAC--EVCGKAYARKYTLREHMR-IHNNDRRFKCHVCSLTFVQKCSLKSHL 86
+ Y C E C K++ R L++H+ IH + F C C F K L+ HL
Sbjct: 231 EERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHL 286
Score = 65.3 bits (152), Expect = 1e-11
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Frame = -3
Query: 730 CAKCASTYETFKMLKQHMNKHYSNYVCG--KCGTAFATKRSLHSHRNVHKEG--SYKCGY 563
C +C S ++ + + H Y C C FATK+ L +H N E SY C +
Sbjct: 120 CDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPH 179
Query: 562 CDKVFSNRPKKCYHEKLQHLGESNISKCQHCGAPFKSYYQRNQHLIRVHN---DEAK-YK 395
+ + + + + H+ E+++ C CG FK+ H++ +H +E K Y
Sbjct: 180 -ESCVGHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVV-LHQTTLEERKTYH 237
Query: 394 CNV--CNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTGERIY 227
C + C KS+ S L HI H C CG +F K L+ H+ R T ++ +
Sbjct: 238 CPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAH 295
Score = 58.4 bits (135), Expect = 1e-09
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 19/228 (8%)
Frame = -3
Query: 721 CASTYETFKMLKQHMNKHYSN--YVCG--KCGTAFATKRSLHSHRNV-HKEG-SYKCGY- 563
C + + T + L++H+ H Y C C F+ + L SH + H Y C Y
Sbjct: 90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQ 149
Query: 562 -CDKVFSNRPKKCYHEKLQHLGESNIS-KCQH--CGAP--FKSYYQRNQHLIRVHNDEAK 401
C+ F+ + K H H E IS C H C F+ + Q H+ H
Sbjct: 150 DCELRFATKQKLQNHVNRAH--EKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPS-- 205
Query: 400 YKCNVCNKSYLLKSLLMYHI--KRNHLLER---NCQCTECGYRFFSKKALKAHM-VRHTG 239
C++C + + + L +H+ + L ER +C C F ALK H+ V H G
Sbjct: 206 --CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEG 263
Query: 238 ERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLK 95
+ C+ CG + K+ L+ H+ R C ++ +C +K
Sbjct: 264 NMAFHCDSCGTKFGYKHMLQRHL------ERGTCKKAHKPYINECGIK 305
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -3
Query: 316 NCQCTECGYRFFSKKALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMRIHNNDRRF 143
+C ECG ++ L+ H+ H+ ER + C+ C KA+ RK L+ H R H N + F
Sbjct: 24 HCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPF 83
Query: 142 KCHV--CSLTFVQKCSLKSHL 86
CH C F + L+ H+
Sbjct: 84 SCHYDGCDAQFYTQQHLERHI 104
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -3
Query: 244 TGERIYAC--EVCGKAYARKYTLREHMRIHNNDRRFKCHV--CSLTFVQKCSLKSHLLSN 77
+ ++I+ C E CGK Y+R L +H+R H+N+R F C CS F +K LK H +
Sbjct: 18 SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCH 77
Query: 76 HGISVAAC 53
+ +C
Sbjct: 78 TNVKPFSC 85
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/81 (33%), Positives = 40/81 (49%)
Frame = -3
Query: 313 CQCTECGYRFFSKKALKAHMVRHTGERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCH 134
C C RF LK+HM HT R + C +C K++AR++ R H ++H + F C
Sbjct: 572 CTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACV 631
Query: 133 VCSLTFVQKCSLKSHLLSNHG 71
C+ F + +L H S G
Sbjct: 632 TCNQRFARMDALNRHYKSEVG 652
Score = 48.8 bits (111), Expect = 9e-07
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 229 YACEV--CGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNHGISVAA 56
Y C C K + R Y L+ HM H N R F+C +C +F ++ + H + GI A
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFA 629
Query: 55 C 53
C
Sbjct: 630 C 630
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -3
Query: 409 EAKYKCNV--CNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTGE 236
+ Y C CNK + L H+ H R QC+ C F + + H HTG
Sbjct: 567 QGNYVCTFAGCNKRFTRAYNLKSHMN-THTNYRPFQCSICKKSFARQHDKRRHEQLHTGI 625
Query: 235 RIYACEVCGKAYARKYTLREHMR 167
+ +AC C + +AR L H +
Sbjct: 626 KAFACVTCNQRFARMDALNRHYK 648
Score = 41.9 bits (94), Expect = 1e-04
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -3
Query: 676 NKHYSNYVC--GKCGTAFATKRSLHSHRNVHKE-GSYKCGYCDKVFSNRPKKCYHEKLQH 506
+K NYVC C F +L SH N H ++C C K F+ + K HE+L H
Sbjct: 564 SKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQL-H 622
Query: 505 LGESNISKCQHCGAPFKSYYQRNQH 431
G + C C F N+H
Sbjct: 623 TGIKAFA-CVTCNQRFARMDALNRH 646
Score = 35.1 bits (77), Expect = 0.012
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = -3
Query: 763 EFKLKSGDVFDCAKCASTYETFKMLKQHMNKH--YSNYVCGKCGTAFATKRSLHSHRNVH 590
E K + V A C + LK HMN H Y + C C +FA + H +H
Sbjct: 563 ESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
Query: 589 KE-GSYKCGYCDKVFSNRPKKCYHEK 515
++ C C++ F+ H K
Sbjct: 623 TGIKAFACVTCNQRFARMDALNRHYK 648
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = -3
Query: 472 CGAPFKSYYQRNQHLIRVHNDEAKYKCNVCNKSYLLKSLLMYHIKRNHLLERNCQCTECG 293
C F Y H+ H + ++C++C KS+ + H ++ H + C C
Sbjct: 577 CNKRFTRAYNLKSHM-NTHTNYRPFQCSICKKSFARQHDKRRH-EQLHTGIKAFACVTCN 634
Query: 292 YRFFSKKALKAHMVRHTGE 236
RF AL H G+
Sbjct: 635 QRFARMDALNRHYKSEVGQ 653
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = -3
Query: 313 CQCTECGYRFFSKKALKAHMVRHTGERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCH 134
C C R K +++H+ H +R Y C++C + R + L+ H+RIH N R + C
Sbjct: 445 CLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE 504
Query: 133 VCSLTFVQKCSLKSHLLSN 77
C F + +L H N
Sbjct: 505 -CLKRFNRLDALNRHKQRN 522
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -3
Query: 214 CGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNHGISVAACE 50
C K ARKY + H++ H +DR ++C +C FV+ LK HL + CE
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE 504
Score = 43.6 bits (98), Expect = 3e-05
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 409 EAKYKC--NVCNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTGE 236
+ KY C N CNK K + HI+ HL +R +C C F LK H+ H
Sbjct: 440 DGKYVCLYNGCNKRIARKYNVESHIQ-THLSDRPYRCDLCKAGFVRHHDLKRHLRIHENG 498
Query: 235 RIYACEVCGKAYARKYTLREH 173
R Y CE C K + R L H
Sbjct: 499 RPYVCE-CLKRFNRLDALNRH 518
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -3
Query: 691 LKQHMNKHYSN--YVCGKCGTAFATKRSLHSHRNVHKEG-SYKCGYCDKVFSNRPKKCYH 521
++ H+ H S+ Y C C F L H +H+ G Y C C K F NR
Sbjct: 460 VESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRF-NRLDALNR 517
Query: 520 EKLQHLGESNISKCQH 473
K +++ + + QH
Sbjct: 518 HKQRNICVGGVDRRQH 533
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = -3
Query: 472 CGAPFKSYYQRNQHLIRVHNDEAKYKCNVCNKSYLLKSLLMYHIKRNHLLERNCQCTECG 293
C Y H I+ H + Y+C++C ++ L H+ R H R C EC
Sbjct: 450 CNKRIARKYNVESH-IQTHLSDRPYRCDLCKAGFVRHHDLKRHL-RIHENGRPYVC-ECL 506
Query: 292 YRFFSKKALKAHMVRH 245
RF AL H R+
Sbjct: 507 KRFNRLDALNRHKQRN 522
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 310 QCTECGYRFFSKKALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMRIH 161
+CTEC F +LK H HTGER + C+ CGKA+ + +R H RIH
Sbjct: 469 RCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 229 YACEVCGKAYARKYTLREHMRIHNNDRRFKCHV--CSLTFVQKCSLKSH 89
Y C C + ++R +L+ H H +R F C C F + +++ H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 46.8 bits (106), Expect = 4e-06
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -3
Query: 307 CTECGYRFFSKKALKAHMVR-HTGERIYACEVCGKAYARKYTLREHMRIH-NNDRRFKC 137
C EC +F + L+ H+ HT E+ + C +CGK ++R+ LR+H R+H N R C
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASPRLAC 482
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 265 KAHMVRHTGERIYACEVCGKAYARKYTLREHMR-IHNNDRRFKCHVCSLTFVQKCSLKSH 89
K + R G + + C C K + R LR H+R +H +++ F C +C F ++ +L+ H
Sbjct: 411 KTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH 469
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 400 YKCNVCNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRH 245
+ C C+K + L HI+ H E+ C CG RF + L+ H H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHERLH 473
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -3
Query: 283 FSKKALKAHMVRHT-GERIYACEV--CGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFV 113
F++K LK H G+ + C C K++ RK LR H R H N + F C C+ F
Sbjct: 7 FTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFA 66
Query: 112 QKCSLKSHLLSNH 74
+ L H+ H
Sbjct: 67 RSDVLNRHVQQMH 79
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 313 CQCTECGYRFFSKKALKAHMVRHTGERIYACEVCGKAYARKYTLREHMR 167
C +C F K+ L+ H H + ++C C +A+AR L H++
Sbjct: 28 CTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -3
Query: 559 DKVFSNRPKKCYHEKLQHLGESNISKCQHCGAPFKSYYQRNQHLIR---VHNDEAKYKCN 389
++ F+ +P K + LG+ C + P KS+ R +HL R H + + C+
Sbjct: 4 EESFTEKPLK-KRSRAHRLGDPRFY-CTYPDCP-KSF-TRKEHLRRHERTHENVKAFSCS 59
Query: 388 VCNKSYLLKSLLMYHIKRNHLLERN 314
CN+++ +L H+++ HL ++N
Sbjct: 60 FCNRAFARSDVLNRHVQQMHLQKQN 84
Score = 34.7 bits (76), Expect = 0.016
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 643 CGTAFATKRSLHSHRNVHKE-GSYKCGYCDKVFSNRPKKCYHEKLQHLGESNISK 482
C +F K L H H+ ++ C +C++ F+ H + HL + N+S+
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSE 87
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 42.7 bits (96), Expect = 6e-05
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 274 KALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCS 101
KA K+ + G+ Y C+ C K++ RK R H R H N + F C CS +F +
Sbjct: 3 KAKKSRAYQE-GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDV 61
Query: 100 LKSHLLSNH 74
L H+ H
Sbjct: 62 LNRHVNQKH 70
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 307 CTECGYRFFSKKALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMR-IHNND 152
C G S+ AL AH+ HTGE+ + C V C +++ R L +HMR +H D
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 223 CEVCGKAYARKYTLREHMRIHNNDRRFKCHV--CSLTFVQKCSLKSHLLSNH 74
C G ++ L H+R H ++ F C V C +F + +L H+ + H
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 39.5 bits (88), Expect = 5e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 229 YACEVCGKAYARKYTLREHMRIHNNDRRFKC 137
Y CE C +A+AR L+ H+R H N++ F C
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = -3
Query: 307 CTECGYRFFSKKALKAHMVRHTGERIYAC-EV------CGKAYARK-YTLREHMRIHNN 155
C C F + LK H+ HT E+ + C E+ CG+ ++R+ LR +IH N
Sbjct: 72 CETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRN 130
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 319 RNCQCTECGYRFFSKKALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMRIHNN 155
R +C C F+ + H+ HTGE+ + C C K ++R L H RIH N
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTN 80
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 235 RIYACEVCGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNH 74
R Y C +C KA+ R H+R H + K HVC+ K +S L+ H
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGE---KPHVCTFPGCAKRFSRSDELTRH 74
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = -3
Query: 637 TAFATKRSLHSHRNVHKEGSYKCGYCDKVFSNRPKKCYHEKLQHLGES-NISKCQHCGAP 461
TA T + S +N YKC C K F + H + H GE ++ C
Sbjct: 6 TATTTGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIR-THTGEKPHVCTFPGCAKR 64
Query: 460 FKSYYQRNQHLIRVHND 410
F + +H R+H +
Sbjct: 65 FSRSDELTRH-ARIHTN 80
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 238 ERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNH 74
+R++ C+ C K + R L H H+ C C + +K LK H+ H
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/86 (20%), Positives = 31/86 (36%)
Frame = -3
Query: 661 NYVCGKCGTAFATKRSLHSHRNVHKEGSYKCGYCDKVFSNRPKKCYHEKLQHLGESNISK 482
++V + KR L + + + C C K F+ H+ E
Sbjct: 3 DHVSENSTNVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTRHKACHSKAEP--IP 60
Query: 481 CQHCGAPFKSYYQRNQHLIRVHNDEA 404
C +C K +H+ R HND++
Sbjct: 61 CPYCEIKCKRKDLLKRHIQRFHNDKS 86
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 319 RNCQCTECGYRFFSKKALKAHMVRHTGERIYACEV--CGKAYARKYTLREHMRIH 161
++ +C C F ++ H+ HTGE+ + C C K + R+ L H+R H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -3
Query: 229 YACEVCGKAYARKYTLREHMRIHNNDRRFKCHV--CSLTFVQKCSLKSHLLSNHGISVAA 56
Y C C + + R+ H+R H ++ F+C C F ++ L H+ ++ ++
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALVT 63
Query: 55 CEITMTTN 32
E T+ N
Sbjct: 64 PEQTLDVN 71
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 580 SYKCGYCDKVFSNRPKKCYHEKLQHLGESNISKCQHCGAP-FKSYYQRNQHLIR 422
SY+C +C +VF + + H + H GE K C P K + R LIR
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIR-SHTGE----KPFECSYPSCKKRFTRRDELIR 51
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 32.3 bits (70), Expect = 0.083
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = -3
Query: 577 YKCGY--CDKVFSNRPKKCYHEKLQHLGESNISKCQHCGAPFKSYYQRNQHLIRVHNDEA 404
YKC CDK + N+ YH+ H S I+ P + + N+
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYHKLHGHC--SPITTPTPAPIPHQGFVVENK---------- 397
Query: 403 KYKCNVCNKSYLLKSLLMYHIKRNHL 326
Y+C VC+K Y + L YH +HL
Sbjct: 398 PYRCEVCSKRYKNLNGLKYHRTHSHL 423
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 733 DCAKCASTYETFKMLKQHMNKHYSNYV 653
DC CA+++ +F K+HM +S Y+
Sbjct: 209 DCLFCAASFSSFDTCKKHMKASHSLYI 235
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 PFKSYYQRNQHLIRVHNDEAKYKCNV--CNKSYLLKSLLMYHIKRNH 329
P + + + + DE KY+C+V C K +L + HI + H
Sbjct: 453 PVEDFINNELDSVIMKEDEQKYRCHVGTCAKLFLGPEFVRKHINKKH 499
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 439 NQHLIRVHNDEAKYKCNVCNKSYLLKSLLMYHIK-RNHLL 323
N H + DEA + C VC + Y+ S + H K HLL
Sbjct: 58 NSHTMNSKRDEAGFACEVC-QIYIPNSKKINHFKSMTHLL 96
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 502 GESNISKCQHCGAPFKSYYQRNQHLIRVHNDEAKYKCNVCNKSY 371
G + KC + F S YQ + ++ E + C VC + Y
Sbjct: 154 GHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECY 197
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 110 LHEGQAAHVALEPPVVVVDAHVLP 181
L+ G V++ PP++VVD V+P
Sbjct: 565 LYSGTGVIVSVVPPLIVVDRSVIP 588
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 748 SGDVFDCAKCASTYETFKMLKQHMNKHYSNYVCGKCGTAFATK 620
S +FD K + T ++L H N+ Y+NY K T +K
Sbjct: 399 SSCIFD-GKPQNRISTMRILVAHTNERYANYCEAKTATISLSK 440
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/56 (23%), Positives = 20/56 (35%)
Frame = -3
Query: 730 CAKCASTYETFKMLKQHMNKHYSNYVCGKCGTAFATKRSLHSHRNVHKEGSYKCGY 563
CA C + + + H ++ C C T F S + + EG C Y
Sbjct: 180 CASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEY-----EGKVYCHY 230
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 81 DSR*LFKLHFCTKVRLHTW-HLNRRSLLWMRMCSLRVYFL 197
++R L++LH TKV L W H +R S ++ + + + F+
Sbjct: 301 ENRGLYRLHEFTKVELFAWTHPSRSSEMFNEIVNFQKEFV 340
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 658 YVCGKCGTAFATKRSLHSHRNVHKEG 581
YVC KC T A K L SH K G
Sbjct: 14 YVCAKCKTHLAFKGHLLSHDYRGKNG 39
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 733 DCAKCASTYETFKMLKQHMNKHYSN-YVCGKCGTAFAT 623
DC K AST E++K +Y Y+ G+C F +
Sbjct: 216 DCYKLASTIESWKYAPLSAFPNYGPFYIYGQCVATFTS 253
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 122 QAAHVALEPPVVVVDAHVLPQGVLPGVRLAADLARVYPLARVPD 253
+A+ +A PP+++ + V Q RL D + Y +PD
Sbjct: 206 EASRIATIPPMILSEEEVKSQYFNDQSRLVTDCPKFYHFQSMPD 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,560
Number of Sequences: 5004
Number of extensions: 45754
Number of successful extensions: 224
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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