Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c09
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0063 + 6481568-6481570,6481922-6482470                           27   2.7  
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     26   4.7  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    26   4.7  
07_03_1265 + 25304408-25304545,25304895-25305032,25305746-253058...    25   8.2  

>02_02_0063 + 6481568-6481570,6481922-6482470
          Length = 183

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 9  GGGXYHKLHLASMGSG 56
          GGG  H++H AS GSG
Sbjct: 32 GGGSNHQIHTASAGSG 47


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 68  RPPPPXTHGRQVKLVITSPP 9
           +PPPP  HG  VK     PP
Sbjct: 99  QPPPPAQHGACVKRPAIGPP 118


>04_04_1466 -
          33799104-33799229,33799659-33799669,33800052-33800200,
          33800261-33800299,33800690-33800746,33800839-33801628,
          33801705-33801980,33802051-33802117,33802211-33802285,
          33802618-33802812,33802927-33803076,33803152-33803522,
          33804070-33804193,33804246-33804275,33804306-33804417,
          33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 51 NPWTPSEACDNXPPPTH 1
          NPW P  A    PPP++
Sbjct: 12 NPWPPHHAAAQPPPPSY 28


>07_03_1265 +
          25304408-25304545,25304895-25305032,25305746-25305807,
          25306321-25306423,25306560-25306636,25306915-25306971,
          25307202-25307323,25307551-25307667,25308188-25308273,
          25308387-25308560,25308671-25308940
          Length = 447

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 65 PPPPXTHGRQVKLVITSPPQ 6
          PPPP  H     L+  +PPQ
Sbjct: 25 PPPPPLHHHHHPLLAAAPPQ 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,825,825
Number of Sequences: 37544
Number of extensions: 72538
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)