Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c09
         (224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   9.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 156 SRXRPPSXSXXRPP 115
           SR  PPS S   PP
Sbjct: 126 SRDGPPSVSLSSPP 139


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 153 RXRPPSXSXXRPPG 112
           R  PP+ S   PPG
Sbjct: 36  RGSPPNPSQGPPPG 49


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 58  RPEPMDAK 35
           RPEP+DA+
Sbjct: 636 RPEPIDAQ 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,417
Number of Sequences: 438
Number of extensions: 717
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)