Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c08
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 218 CESAILFLKVFSLTLYPILPQPSGPYF*SGHNLLKNLTVI*LTI 87
           C S +L L VF L L  I+P  S      G  LL  + ++ L+I
Sbjct: 284 CSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSI 327


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/31 (19%), Positives = 16/31 (51%)
 Frame = -3

Query: 657 KFTQICMQCNFCAVLTSVKVKLALWFVTMKT 565
           ++  +C + N    L+  + ++ +WF   +T
Sbjct: 31  RYLSVCERLNLALSLSLTETQVKIWFQNRRT 61


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 736 VYDFQNEQIKIVGTVLFYP 792
           VYDF+N +   +   LFYP
Sbjct: 210 VYDFRNSRSWRITNNLFYP 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,271
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)