Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c06
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0965 + 21915842-21916906                                         30   1.7  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    29   5.2  
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    29   5.2  
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    28   9.2  

>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 90  TQANTVAAAMKAHIDIQIILNPIPASD-LSCSLLCR--FHSRINSPLLLVDSSCVLCYHS 260
           T A+++AA  K+  D  +  +     D L     CR  FHSR   P L  + SC LC  S
Sbjct: 114 TLASSLAALPKSSRDCAVCQSAFRDDDELRLLPACRHAFHSRCVDPWLRANPSCPLCRAS 173

Query: 261 LCFFH 275
           +   H
Sbjct: 174 IALPH 178


>06_03_0191 -
           17720512-17721435,17721718-17721843,17721940-17722140,
           17722189-17722332,17722415-17722722,17723433-17723568,
           17723748-17723841,17723976-17724073,17724951-17725004,
           17725704-17726150,17726227-17726393,17726540-17726663,
           17726751-17726837,17727000-17727056,17727492-17727560,
           17727664-17727811,17727893-17728116,17728842-17728958,
           17729649-17729742,17730573-17730640,17733278-17733334,
           17733412-17733511,17733638-17733674,17734077-17734200,
           17735254-17735322,17735371-17735410,17735905-17735993,
           17736849-17736953,17737033-17737104,17737814-17737936,
           17738049-17738117,17738966-17739059,17739145-17739231,
           17740184-17740351,17740436-17740552,17741484-17741590,
           17741671-17741803,17742564-17742667,17743504-17743629,
           17744148-17744216,17744996-17745064,17745278-17745358,
           17745444-17745533,17745896-17746000,17747803-17747873,
           17748320-17748461,17749266-17749330,17750081-17750168,
           17750236-17750325,17750437-17750673,17751064-17751170,
           17751625-17751832,17752376-17752546
          Length = 2366

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 9   NPPSYLPFLPEQRHDINLTEVSLKQTGTQANTVAAAMKAHIDIQIILNPI-----PASDL 173
           NP SYL  + +   ++ +  V+++       +  + +  + +  I+LNP+      A  L
Sbjct: 672 NPESYLRHVQDWASELRVLSVAIEALTAFIRSFVSPIMTNANGGILLNPVLAYLGGALSL 731

Query: 174 SCSLLCRFHSRINSPLLLVDSSCVLCYHSL 263
             SL  +    +NS L L  +  ++ Y SL
Sbjct: 732 ISSLSSKKLPNVNSALNLFTTRTLMAYQSL 761


>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +3

Query: 78  KQTGTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLC--RFHSRINSPLLLVDSSCVLC 251
           KQ   +A+     ++  +   + L  +   DL  SL C  +FH+    P L    +C +C
Sbjct: 203 KQDRFKADATDNTLEDELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVC 262

Query: 252 YH 257
            H
Sbjct: 263 KH 264


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 569 VSARGFPERRAEKTQALQARKEPKVREVQRDCKGKCATSI 450
           + ARG+P  +  K   L   K P+ +E   +  G CA  +
Sbjct: 483 MEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQL 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,537
Number of Sequences: 37544
Number of extensions: 261039
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)