Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c06
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 8.2
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 28 8.2
U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical pr... 28 8.2
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 28 8.2
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 28 8.2
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 28 8.2
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 28 8.2
>U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical
protein F47E1.2 protein.
Length = 744
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 15 PSYLPFLPEQRHDINLTEVSLKQTGTQANTVA-AAMKAHIDIQIILNPIP 161
P++L P+ HDIN TEVS K T + + +K + Q+I + +P
Sbjct: 91 PNFL--FPQGHHDINTTEVSAKLKPTAGQLASNSTLKQLLSYQLIRDRMP 138
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 201 CGSGTASYSSGLMLVLDSK*FVCRCAPS*QPRR 103
C S S +VL++ ++C C+P Q RR
Sbjct: 166 CASNPCQNSGNCTMVLENSNYLCTCSPDWQGRR 198
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4863 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4913
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4852 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4902
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4318 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4368
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4863 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4913
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4852 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4902
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4318 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4368
>U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical
protein F09F9.2 protein.
Length = 165
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 551 PERRAEKTQALQARKEPKVREVQRDCKGK 465
P + KTQ + P V +VQRD KG+
Sbjct: 78 PMAKKVKTQKISTTTPPTVSDVQRDSKGR 106
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4863 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4913
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4852 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4902
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4318 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4368
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 87 GTQANTVAAAMKAHIDIQIILNPIPASDLSCSLLCRFHSRINSPLLLVDSS 239
GT TV H D + P SD+S L R S NS +VDSS
Sbjct: 4852 GTAGYTVTTDSHRHTDARPSRIPRAPSDMSAGRLSRVGSVSNSKNSIVDSS 4902
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,514
Number of Sequences: 27780
Number of extensions: 224758
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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