Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c04
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    83   5e-17
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    56   6e-09
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    45   1e-05
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    37   0.002
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    35   0.010
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    33   0.052
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    29   0.48 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   7.8  

>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 35/48 (72%), Positives = 43/48 (89%)
 Frame = -3

Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
           RTVLLSIQAL+ APNPDDPL NDVA++WK NE +AI NA+EWT++YA+
Sbjct: 101 RTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 24/46 (52%), Positives = 35/46 (76%)
 Frame = -3

Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
           VLLSI +LL+ PNPDDPL  ++A ++K + S    +A+EWTR+YA+
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -3

Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
           ++ L+S+Q+LL  P P +P    VA+++  N  + +R A+EWT  YA
Sbjct: 104 KSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -3

Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
           R+VL  I  LL  PNPDDPL   +AE ++ +     + A+++  ++A
Sbjct: 107 RSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESE 593
           +T+LLS+Q+LL  PN   PL    AELW  +  E
Sbjct: 128 QTILLSLQSLLGEPNNASPLNAQAAELWSKDPIE 161


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 691 TVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 560
           T+L+S+ ++LS+PN + P   D A+ ++ N  E  +  +   RR
Sbjct: 119 TILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRR 162


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 560
           +LLS+ ++L+ PN +     D  ++W+ +  E  R  +   R+
Sbjct: 120 ILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 37  CSLKKKTKNISMRDQLN 87
           CSL KK KNI+  D+LN
Sbjct: 90  CSLMKKLKNIARLDRLN 106


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 360 WITAKGPAPRPSSTNNKNLIHNSLSQVTLFRMCNITCTH 476
           W+TAK P  RPS     N      +QV++  + NI  T+
Sbjct: 566 WMTAKDPTKRPSLLEVLNCGLLLPNQVSMPNISNIVSTN 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,058
Number of Sequences: 5004
Number of extensions: 57316
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)