Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c04
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0222 - 27662122-27662159,27662251-27662341,27662760-276628... 67 1e-11
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 54 1e-07
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 53 2e-07
06_03_0198 - 17797574-17797717,17797995-17798099,17798509-177986... 52 3e-07
01_06_1150 + 34910941-34911010,34911611-34911738,34912025-349121... 52 3e-07
02_01_0154 + 1078561-1078630,1078758-1078885,1079016-1079120,107... 49 3e-06
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 46 3e-05
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 45 5e-05
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 43 2e-04
02_02_0339 + 9115297-9115366,9116280-9116407,9117537-9117641,911... 39 0.003
01_01_1187 + 9444742-9445317 39 0.003
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969... 36 0.023
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 36 0.041
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 36 0.041
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 36 0.041
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 32 0.50
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 31 1.2
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130... 31 1.2
10_08_0755 - 20329127-20329189,20329276-20329389,20329465-203296... 30 1.5
10_08_0197 + 15666873-15666916,15667098-15667177,15667490-156676... 29 3.5
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 29 3.5
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 29 4.7
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 28 6.2
03_05_0231 - 22170343-22172004,22172225-22172449 28 8.1
01_05_0190 + 19085897-19085968,19086269-19086344,19086945-190869... 28 8.1
>01_06_0222 -
27662122-27662159,27662251-27662341,27662760-27662801,
27663591-27663649,27664300-27664386,27664501-27664528,
27664683-27664718
Length = 126
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = -3
Query: 673 QALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
+ALLSAPNPDDPL++++A+ WK NE+EA+ AKEWTR YA
Sbjct: 84 KALLSAPNPDDPLSDNIAKHWKANEAEAVETAKEWTRLYA 123
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMDN 545
VLLSI +LL+ PNPDDPL ++A ++K A+ WT++YAM N
Sbjct: 102 VLLSISSLLTDPNPDDPLVPEIAHVYKSQRPRYEETARAWTQKYAMGN 149
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL+ PNPDDPL ++A ++K + ++ A+ WT++YAM
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAM 147
>06_03_0198 -
17797574-17797717,17797995-17798099,17798509-17798636,
17799444-17799513
Length = 148
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL+ PNPDDPL ++A ++K + ++ A+ WT++YAM
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAM 147
>01_06_1150 +
34910941-34911010,34911611-34911738,34912025-34912129,
34912525-34912668
Length = 148
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL+ PNPDDPL ++A ++K + + A+ WT++YAM
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAM 147
>02_01_0154 +
1078561-1078630,1078758-1078885,1079016-1079120,
1079228-1079371
Length = 148
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL+ PNPDDPL ++A + K + A+ WT++YAM
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMCKTDRLRYESTARGWTQKYAM 147
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = -3
Query: 691 TVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
TVL SI LLS PNPDD L +++ +K N NA+ WT +YA
Sbjct: 115 TVLTSIGLLLSDPNPDDGLMAEISREYKYNRQVFDINARSWTEKYA 160
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTR 563
VLLSI +LL+ PNPDDPL ++A ++K + + A+ WT+
Sbjct: 326 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRHKYENTARTWTQ 367
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMDN 545
+T LLS+QALLSAP PDDP VA+ + + S A+ WT +A ++
Sbjct: 104 KTALLSLQALLSAPAPDDPQDAVVAQQYLRDYSTFSATARYWTEAFAKNS 153
>02_02_0339 +
9115297-9115366,9116280-9116407,9117537-9117641,
9118165-9118259,9119472-9119538,9119685-9119720
Length = 166
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESE 593
VLLSI +LL+ PNPDDPL ++A ++K + ++
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAK 133
>01_01_1187 + 9444742-9445317
Length = 191
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESE 593
RT+LLSIQ+LL PN D PL A LW N+ E
Sbjct: 146 RTILLSIQSLLGEPNNDSPLNTQAAALWP-NQDE 178
>07_03_1012 +
23295976-23296264,23296475-23296548,23296972-23296996,
23297486-23297568,23297653-23297685,23298322-23298469,
23298625-23298722
Length = 249
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
VLL+I+A+++ P+P PL + L+ + ++ A EWT R+A
Sbjct: 204 VLLAIKAIITNPDPYCPLVPSIGHLYLTDRTKHDEIAAEWTMRFA 248
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKE 572
+L SIQ+LL PNP+ P ++ A L+ N+ E R +E
Sbjct: 129 ILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVRE 167
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKE 572
+L SIQ+LL PNP+ P ++ A L+ N+ E R +E
Sbjct: 80 ILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVRE 118
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKE 572
+L SIQ+LL PNP+ P ++ A L+ N+ E R +E
Sbjct: 105 ILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRKVRE 143
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 685 LLSIQALLSAPNPDDPLANDVAELWKVNESEAI-RNAKEWTRR 560
LL ++L P D P+ +D+AE ++ NE E + A+EWTRR
Sbjct: 153 LLGFVSILYDPLLDYPINDDIAEQYE-NEYELYEKEAREWTRR 194
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 460 LHILNRVTCERLLWIKFLLLVDEGRGAGPFAVIHCLTLFASERLGDP 320
L L V C RLLW + ++L + G F I L++ +S LGDP
Sbjct: 1147 LQSLEIVDCPRLLWPQ-MMLEEACEGKTKFPSITHLSIVSSSMLGDP 1192
>03_01_0159 +
1298002-1298070,1298181-1298264,1300354-1300506,
1300589-1300702,1300814-1300876
Length = 160
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRY 557
+ +L+ IQ LL PNP DP D L+ + +E R + ++Y
Sbjct: 111 KQILVGIQDLLDQPNPADPAQTDGYHLFIQDPTEYKRRVRLQAKQY 156
>10_08_0755 -
20329127-20329189,20329276-20329389,20329465-20329617,
20331790-20332035
Length = 191
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRY 557
+ +L+ IQ LL PNP DP D ++ ++ E R + ++Y
Sbjct: 142 KQILVGIQDLLDQPNPADPAQTDGYHIFIQDKPEYKRRVRVQAKQY 187
>10_08_0197 +
15666873-15666916,15667098-15667177,15667490-15667604,
15667698-15667786,15667850-15667978,15670362-15670492
Length = 195
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 667 LLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
LL PNP DPL + A L + + KE+ +YA
Sbjct: 122 LLLYPNPSDPLNGEAAALMMRDRPAYEQKVKEYCEKYA 159
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 691 TVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAK 575
T++ + L S PN +DPL ++ A + + N + RN +
Sbjct: 431 TIVYGLNLLFSQPNDEDPLNHEAAAVLRDNPEKFERNVQ 469
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 691 TVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 560
+++LSI ++LS PN + P + A+ W+ + + + R+
Sbjct: 121 SIVLSIISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRK 164
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 691 TVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 560
+++LSI ++LS+PN + P + A+ W+ + + + R+
Sbjct: 121 SIVLSIISMLSSPNDESPANIEAAKDWREKRDDFKKKVRRIVRK 164
>03_05_0231 - 22170343-22172004,22172225-22172449
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 370 AVIHCLTLFASERLGDPTDHCLP 302
A + FA +R G+PTD CLP
Sbjct: 258 AAARSFSYFAFDRDGEPTDECLP 280
>01_05_0190 +
19085897-19085968,19086269-19086344,19086945-19086997,
19087270-19087419,19087553-19087652,19087740-19087806,
19088315-19088397,19088497-19088510
Length = 204
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 606 TFHNSATSFASGSSGLGADSRA*IDSSTVR 695
TF+ F + SSGLG DS A DSS+ R
Sbjct: 60 TFYPWVMQFRNYSSGLGGDSTATGDSSSTR 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,971
Number of Sequences: 37544
Number of extensions: 378410
Number of successful extensions: 936
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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