Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c04
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 83 2e-16
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 53 2e-07
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 53 2e-07
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 39 0.004
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 36 0.021
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 36 0.021
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 32 0.34
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 32 0.34
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 31 0.79
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 31 0.79
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 30 1.8
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 29 3.2
Z81474-7|CAH60750.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 28 5.5
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 28 7.3
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 28 7.3
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 9.7
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 27 9.7
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 9.7
AL132860-7|CAB60522.1| 300|Caenorhabditis elegans Hypothetical ... 27 9.7
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 9.7
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 9.7
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 27 9.7
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/47 (78%), Positives = 41/47 (87%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
RTVLLSIQALLSAPNP+DPLA DVAE WK NE+EAI+ AK+WT YA
Sbjct: 103 RTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMNYA 149
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL PNPDDPL ++A ++K + + A+EWT++YAM
Sbjct: 102 VLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAM 551
VLLSI +LL PNPDDPL ++A ++K + + A+EWT++YAM
Sbjct: 102 VLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
RTVLLSIQAL+ P P DP VA+ + + A+ WT ++A
Sbjct: 107 RTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFA 153
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
RTVLLS+QA+L +P P DP VA+ + N A WT +A
Sbjct: 136 RTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
V++++ +L++ P P P+ DVAE ++ + + ++ A+E TR++A
Sbjct: 104 VMMALLSLINEPEPSHPIRADVAEEFQKDHKKFMKTAEEHTRKHA 148
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESE 593
+L SIQ+LL PNP+ P + A+L++ N E
Sbjct: 105 ILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESE 593
+L SIQ+LL PNP+ P + A+L++ N E
Sbjct: 105 ILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMD 548
+ +L+ IQ LL+ PN +DP + +++ N +E + K+ +YA +
Sbjct: 110 KQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMD 548
+ +L+ IQ LL+ PN +DP + +++ N +E + K+ +YA +
Sbjct: 110 KQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYAAE 158
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 667 LLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYAMDN 545
LL+ PN DPL + A L+ E R +E+ R+A ++
Sbjct: 113 LLTYPNAADPLNGEAARLYIHKPEEYRRTCREYVMRFASEH 153
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRR 560
+LLS+ ++L+ PN + P A++W+ + ++ + A R+
Sbjct: 119 ILLSVVSMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRK 161
>Z81474-7|CAH60750.1| 305|Caenorhabditis elegans Hypothetical
protein C18D4.5 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 236 IKKIYLESSMYILCWFKINFVQKIVSICKV*LSMPETYRTQSY*NLIVTSFN*SLIEMFF 57
I ++YL ++++++ + +NF IV K L+ Y+ + +E F
Sbjct: 67 IVQMYLIATIFVIFYLVLNFEDDIVGASKTILTFLFVYQLYITTQVFQIMLLRVALERFI 126
Query: 56 VFFFSE 39
VFFF E
Sbjct: 127 VFFFPE 132
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 315 SVGSPSRSEANKVRQWITAKGPAPRPSSTNNKNLIH 422
S G+P S +N+ +++GP P PSS++ ++ H
Sbjct: 315 SSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSH 350
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 315 SVGSPSRSEANKVRQWITAKGPAPRPSSTNNKNLIH 422
S G+P S +N+ +++GP P PSS++ ++ H
Sbjct: 315 SSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYSH 350
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 646 DDPLANDVAELWKVNESEAIRNAKEW 569
D PL +D +WKVNES + A W
Sbjct: 346 DLPLRDDSDNIWKVNESGRLAVALRW 371
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 688 VLLSIQALLSAPNPDDPLANDVAELWKVNESEAIRNAKEWTRRYA 554
VL+ IQ+ +S N +P+ ++ E N + A+ WT+R+A
Sbjct: 452 VLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEKTAEFWTKRFA 496
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 670 ALLSAPNPDDPLAN-DVAELWKVNESEAIRNAKEWT 566
AL+ NP N DVAE+ + N S I N EWT
Sbjct: 286 ALVELKNPTVNAENEDVAEVKERNRSIVIHNVPEWT 321
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 366 LSIASPCSPRNG*AIPQIIVYPFTCSLVTILGMHIFLLLI 247
LSI S SP A+P + ++ FTC ++ + +F + +
Sbjct: 275 LSIVSEMSPPTSEAVPLLGIF-FTCCMIVVTASTVFTVYV 313
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
protein W02C12.1 protein.
Length = 1372
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 519 CRPCAPHDQRDITTYECKLC 460
C PCAP T EC+LC
Sbjct: 933 CVPCAPGTYHSAATGECELC 952
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 366 LSIASPCSPRNG*AIPQIIVYPFTCSLVTILGMHIFLLLI 247
LSI S SP A+P + ++ FTC ++ + +F + +
Sbjct: 275 LSIVSEMSPPTSEAVPLLGIF-FTCCMIVVTASTVFTVYV 313
>AL132860-7|CAB60522.1| 300|Caenorhabditis elegans Hypothetical
protein Y56A3A.10 protein.
Length = 300
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 351 VRQWITAKGPAPRPSSTNNKNLIHNSLSQVTLFRMCNITCTHKS*Y-LVGRVARTVGTGA 527
+R WI P +N + + + LF+ N THK+ Y ++R GT A
Sbjct: 223 MRSWIKGSNPRLTKFCIHNSPRVRDPYFETLLFQNMNYIETHKNKYWRTFEISRPDGTKA 282
Query: 528 LV 533
++
Sbjct: 283 II 284
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 366 LSIASPCSPRNG*AIPQIIVYPFTCSLVTILGMHIFLLLI 247
LSI S SP A+P + ++ FTC ++ + +F + +
Sbjct: 275 LSIVSEMSPPTSEAVPLLGIF-FTCCMIVVTASTVFTVYV 313
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 366 LSIASPCSPRNG*AIPQIIVYPFTCSLVTILGMHIFLLLI 247
LSI S SP A+P + ++ FTC ++ + +F + +
Sbjct: 275 LSIVSEMSPPTSEAVPLLGIF-FTCCMIVVTASTVFTVYV 313
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 694 RTVLLSIQALLSAPNPDDPLANDVAELWK 608
RT+LLS+ +LL+ PN P D + +++
Sbjct: 122 RTILLSVISLLNEPNTSSPANVDASVMYR 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,041
Number of Sequences: 27780
Number of extensions: 327847
Number of successful extensions: 768
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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