Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c04
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 191 TSIIYTLKTPGIFSLFTIHINSKKICIPNIVTKLH 295
           TS++  L   G F LFT+ +++  IC+  +V  +H
Sbjct: 296 TSLVVPLL--GKFVLFTMILDTFSICVTVVVLNVH 328


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 574 EWTRRYAMDN*IAGTRAPVPT 512
           EW R + +DN I+G  +  P+
Sbjct: 132 EWDRLWVLDNGISGETSVCPS 152


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 209 MYILCWFKINFVQKIVSICKV*LS 138
           ++++CW     V  + S CK  +S
Sbjct: 280 VFLICWVPFFCVNIVTSYCKTCIS 303


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 57  KKHFNERSVK*CYNQILVRLCPISLWH 137
           KK  +    K  YN   V   PIS WH
Sbjct: 98  KKEVSSYIKKIGYNPAAVAFVPISGWH 124


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 57  KKHFNERSVK*CYNQILVRLCPISLWH 137
           KK  +    K  YN   V   PIS WH
Sbjct: 114 KKEVSSYIKKIGYNPAAVAFVPISGWH 140


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 57  KKHFNERSVK*CYNQILVRLCPISLWH 137
           KK  +    K  YN   V   PIS WH
Sbjct: 171 KKEVSSYIKKIGYNPAAVAFVPISGWH 197


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 57  KKHFNERSVK*CYNQILVRLCPISLWH 137
           KK  +    K  YN   V   PIS WH
Sbjct: 171 KKEVSSYIKKIGYNTASVAFVPISGWH 197


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 358 NG*LQRDRRRGPHPLIIKI*STIVSHK 438
           NG L  ++R    P +IKI    ++HK
Sbjct: 472 NGLLLEEQRNDDKPFLIKIRQYRLNHK 498


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 358 NG*LQRDRRRGPHPLIIKI*STIVSHK 438
           NG L  ++R    P +IKI    ++HK
Sbjct: 472 NGLLLEEQRNDDKPFLIKIRQYRLNHK 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,909
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)