Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c03
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    68   3e-25
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.85 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    29   0.85 
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    29   1.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.0  

>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 67.7 bits (158), Expect(2) = 3e-25
 Identities = 30/107 (28%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = -3

Query: 674 NAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADE 495
           + + ++  ++++ LY+++  L+ LEKA+ +D V   ++ + C  L+ Q++  F   +  +
Sbjct: 21  HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQ 80

Query: 494 -FPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVS 357
            F + E F +KYRL CP A++RI+E     I D++  +N   +  +S
Sbjct: 81  AFGSFEDFCSKYRLQCPRAIKRIQEG----ISDERSQSNSTFSNAIS 123



 Score = 63.3 bits (147), Expect(2) = 3e-25
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = -3

Query: 380 KYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLD 204
           K IA +V  FIT +D +RL F A D + P L +L  +MD L+  L      + K+ +WL 
Sbjct: 155 KSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLKIQVSCRNKLVQWLI 214

Query: 203 KLSEMSASDELSEAQVRQLVFDLETSY 123
           K++ M+ +D+L++ + R+L++DLE +Y
Sbjct: 215 KINNMNITDQLNDVEKRELLYDLEQAY 241


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 461 CI*QQKLQYWETHQPVLV*KPLCTARGDDCMPPCIPVLAHNHACMP 598
           C  Q+K ++ +   P     P    RG DC  PC P+L H   C P
Sbjct: 261 CGKQEKPEFVKNLVPHSCGDPCGKTRGQDCEHPC-PLLCHPGPCPP 305


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 281 LRDTMDRLSMLPDDFEGKLKVQ-EWLDKLSEMSASDELSEAQVRQLVFDL 135
           L+DT DRL++  D+++G+ +V  E ++K+ +   S  L E     L+ DL
Sbjct: 289 LKDTYDRLNIHYDEYDGESQVSLELMNKMVDELRSLNLIEEDGGALLIDL 338


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +1

Query: 352 NNDTISAMYLLVFPLSSLMRFGLFSLIRSKAAGQSNLYLATKASILGNSS 501
           +NDT S   ++  PLS      LFSL+RSK   +  LYL T  ++L  S+
Sbjct: 217 SNDTQSCKLIVSLPLSQEECEVLFSLLRSK---KEPLYLNTLLALLVESN 263


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 655 SMITWLSSMLSSVPFSTW 602
           +M+ W  S  S+VPFS+W
Sbjct: 419 NMVFWSKSSSSTVPFSSW 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,852
Number of Sequences: 5004
Number of extensions: 68393
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)