Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c03
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0927 + 33082645-33083286 152 4e-37
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 38 0.010
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 34 0.13
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 29 3.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 4.8
05_01_0321 + 2535201-2535260,2535366-2535700,2535705-2535849,253... 29 6.3
04_04_0561 - 26250488-26251451,26251499-26251620 29 6.3
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 8.3
08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054 28 8.3
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 28 8.3
>01_06_0927 + 33082645-33083286
Length = 213
Score = 152 bits (368), Expect = 4e-37
Identities = 85/205 (41%), Positives = 122/205 (59%), Gaps = 12/205 (5%)
Frame = -3
Query: 692 EIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFK 513
E+KL+ + RERE +++A+LYA++ + LE+AY+RD V A +Y A C +L+ Q+
Sbjct: 2 EVKLWNDKRERELLESLADLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQFNSLSS 61
Query: 512 QVQADEFPNIEAFVAKYRLDCPAALER-IRENKPNLIK----------DDKGNTNKYIAE 366
+ I FV YRLDCPAAL R ++ P ++ + IA+
Sbjct: 62 SLAG--VVTIPRFVEAYRLDCPAALNRLVQSGVPATVELRAAASSSAPASSAASAAAIAQ 119
Query: 365 IVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLDKLSEM 189
V FIT MD ++L A D ++P L DL +M +L +LP DFEGK+KV EWL KL++M
Sbjct: 120 CVQSFITAMDAVKLNMLANDQVRPLLHDLSTSMGKLGPVLPPDFEGKVKVSEWLAKLNKM 179
Query: 188 SASDELSEAQVRQLVFDLETSYGAF 114
A DEL+E Q RQL FDL+++Y AF
Sbjct: 180 GAGDELTEQQARQLNFDLDSAYSAF 204
>12_01_0590 -
4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 37.9 bits (84), Expect = 0.010
Identities = 27/99 (27%), Positives = 53/99 (53%)
Frame = -3
Query: 392 GNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
G N ++++ +L KLR + + ++ ELR +R +++L+ + D+ +G+ K E
Sbjct: 7 GAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELRSMRALLEKLAAM-DELDGQAK--E 63
Query: 212 WLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLHK 96
W D++ EMS E + + L+ + G+ N F+HK
Sbjct: 64 WRDQVREMSYD---IEDCIDDFLHQLDKNNGS-NGFVHK 98
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 34.3 bits (75), Expect = 0.13
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = -3
Query: 359 SLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGK----LKVQEWLDKLS- 195
SL L++ ++ E M + E+R L DT++ L D E K Q+W+ KL
Sbjct: 11 SLGDILIETMKEEASLMLGVSDEIRKLYDTLNSLKKFLQDAEKKHITSSYAQDWVRKLKG 70
Query: 194 ---EMSASDELSEAQVRQLVFDLETSYGAFNKFL 102
E S +L + + + ++TS G F+ FL
Sbjct: 71 AMYEASDITDLVQIKAEERRISMDTSSGCFHSFL 104
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = -3
Query: 632 YAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEF-----PNIEAFVA 468
+AVVC + +LE Y+RD A E+ A R ++ + K+V D + P+ +
Sbjct: 296 WAVVCDVWYLEPQYLRDGETAIEF-AERVRDMIAARAGLKKVPWDGYLKHNRPSPKHTEE 354
Query: 467 KYRLDCPAALERIREN 420
K R+ + L R+ E+
Sbjct: 355 KQRIFADSVLRRLEES 370
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 646 TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCSTKWL 518
T L+ LSSV W + +C+HR VS+ +W+
Sbjct: 2300 TQLTGKLSSVQLPPWAENPVDFICKHRKALESDYVSAHLHEWI 2342
>05_01_0321 +
2535201-2535260,2535366-2535700,2535705-2535849,
2535946-2536140,2536243-2536530,2536849-2537035,
2537260-2537306,2537704-2537796
Length = 449
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 131 SPGRTPAVALGLRTVHPMLTSQITYLAI 214
S GR+P GLRT P++T IT +++
Sbjct: 51 STGRSPISYRGLRTQKPLITPDITIMSV 78
>04_04_0561 - 26250488-26251451,26251499-26251620
Length = 361
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 646 TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCST 527
TW +S++ S P TW+R C+ R + +S T
Sbjct: 12 TWTTSLILSTPSHTWQRSLCLPASRSFTPRTREIPTSPPT 51
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 437 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMI--QPELRDLRDTMD 264
ER+ + + N+ D N N+ +++S+ DKL E + M+ + + EL + T+D
Sbjct: 1219 ERLLKKERNI--DTGVNENELHQQLLSI-TEERDKLLSEIKYMNSVINESELIQAKATID 1275
Query: 263 RLSMLPDDFEGKLKVQEWL 207
LS E K+K WL
Sbjct: 1276 ELSSRISIVEAKMKNSYWL 1294
>08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054
Length = 342
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -3
Query: 290 LRDLRDTMDR-LSMLPDDFEGKLKVQEWLDKLSEMSAS-DELSEAQVRQLVFDLETSYGA 117
+RD TM L ML D E ++++W DK+ E++ ++ +A ++ + + S G
Sbjct: 43 IRDELSTMRAALQMLADSEELNPRMKDWRDKVRELAYDMEDCIDAFTSRVDHNNDGSTG- 101
Query: 116 FNKFLHK 96
F +F HK
Sbjct: 102 FKEFFHK 108
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 131 SPGRTPAVALGLRTVHPMLTSQITYLAI 214
S GR+P + + LR PMLT IT +++
Sbjct: 196 STGRSPTLYMELRKEKPMLTPDITIMSV 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,868,502
Number of Sequences: 37544
Number of extensions: 441881
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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