Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c03
(862 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060620-1|AAL28168.1| 210|Drosophila melanogaster GH04443p pro... 322 3e-88
AE013599-580|AAF59143.1| 210|Drosophila melanogaster CG12770-PA... 322 3e-88
AE013599-3289|AAS64755.1| 352|Drosophila melanogaster CG9294-PB... 36 0.095
BT029260-1|ABK30897.1| 469|Drosophila melanogaster FI01124p pro... 31 2.7
AY058765-1|AAL13994.1| 469|Drosophila melanogaster SD03430p pro... 31 2.7
AE014134-2141|AAF53152.2| 469|Drosophila melanogaster CG6792-PA... 31 2.7
AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein. 30 3.6
AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein. 30 3.6
BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p pro... 30 4.7
AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule ... 30 4.7
AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA... 30 4.7
Y09430-1|CAA70581.1| 4151|Drosophila melanogaster Kakapo protein. 29 8.2
AY058503-1|AAL13732.1| 627|Drosophila melanogaster LD21207p pro... 29 8.2
AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short stop/K... 29 8.2
AE014297-4718|AAF57128.1| 641|Drosophila melanogaster CG18729-P... 29 8.2
AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P... 29 8.2
AE013599-1791|AAM68562.1| 5160|Drosophila melanogaster CG18076-P... 29 8.2
AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-P... 29 8.2
AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-P... 29 8.2
AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-P... 29 8.2
AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-P... 29 8.2
>AY060620-1|AAL28168.1| 210|Drosophila melanogaster GH04443p
protein.
Length = 210
Score = 322 bits (792), Expect = 3e-88
Identities = 144/208 (69%), Positives = 180/208 (86%)
Frame = -3
Query: 722 MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSR 543
MQ+ PELYEE+KL++NAREREK+DNMA+LYA++ T+Q LEKAY+RDC+ QEYTAACS+
Sbjct: 1 MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSK 60
Query: 542 LLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI 363
LVQYKVAFKQVQ DEFP++E FV K+RLDCPAALERIRE++P I+DDKGNT+K IAEI
Sbjct: 61 YLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEI 120
Query: 362 VSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSA 183
VSLFIT+MDKLRL+ MD +QP+++DL D M+RLS++P+DF+ KLKV++WL L+EM A
Sbjct: 121 VSLFITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQA 180
Query: 182 SDELSEAQVRQLVFDLETSYGAFNKFLH 99
SDELSE QVRQ +FDLE++Y FNK LH
Sbjct: 181 SDELSEGQVRQFLFDLESAYADFNKLLH 208
>AE013599-580|AAF59143.1| 210|Drosophila melanogaster CG12770-PA
protein.
Length = 210
Score = 322 bits (792), Expect = 3e-88
Identities = 144/208 (69%), Positives = 180/208 (86%)
Frame = -3
Query: 722 MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSR 543
MQ+ PELYEE+KL++NAREREK+DNMA+LYA++ T+Q LEKAY+RDC+ QEYTAACS+
Sbjct: 1 MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSK 60
Query: 542 LLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI 363
LVQYKVAFKQVQ DEFP++E FV K+RLDCPAALERIRE++P I+DDKGNT+K IAEI
Sbjct: 61 YLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEI 120
Query: 362 VSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSA 183
VSLFIT+MDKLRL+ MD +QP+++DL D M+RLS++P+DF+ KLKV++WL L+EM A
Sbjct: 121 VSLFITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQA 180
Query: 182 SDELSEAQVRQLVFDLETSYGAFNKFLH 99
SDELSE QVRQ +FDLE++Y FNK LH
Sbjct: 181 SDELSEGQVRQFLFDLESAYADFNKLLH 208
>AE013599-3289|AAS64755.1| 352|Drosophila melanogaster CG9294-PB,
isoform B protein.
Length = 352
Score = 35.5 bits (78), Expect = 0.095
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -1
Query: 676 KMRVNEKSMITWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCSTKWLSNKYRLM 497
++R NE + WL S+L +P +T T V+ TRR SS +++ +++ +
Sbjct: 22 RIRPNEGKIFEWLGSIL--LPSTTTTTSTPVVATTSTTTRRTTTTSSTTSRTTTSRTTVA 79
Query: 496 SFPI 485
+FPI
Sbjct: 80 NFPI 83
>BT029260-1|ABK30897.1| 469|Drosophila melanogaster FI01124p
protein.
Length = 469
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 452 CPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRD 273
C + + K + +K + N+Y ++ DK++ + + +P +L +
Sbjct: 360 CGCKFSQSKNLKRHALKHTENGPNRYKCQLCGFSSHRSDKMKEHVQRVHTEKPVQLELSE 419
Query: 272 TMDRLSMLPDDFE 234
T+D S PDDFE
Sbjct: 420 TVD--SSFPDDFE 430
>AY058765-1|AAL13994.1| 469|Drosophila melanogaster SD03430p
protein.
Length = 469
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 452 CPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRD 273
C + + K + +K + N+Y ++ DK++ + + +P +L +
Sbjct: 360 CGCKFSQSKNLKRHALKHTENGPNRYKCQLCGFSSHRSDKMKEHVQRVHTEKPVQLELSE 419
Query: 272 TMDRLSMLPDDFE 234
T+D S PDDFE
Sbjct: 420 TVD--SSFPDDFE 430
>AE014134-2141|AAF53152.2| 469|Drosophila melanogaster CG6792-PA
protein.
Length = 469
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 452 CPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRD 273
C + + K + +K + N+Y ++ DK++ + + +P +L +
Sbjct: 360 CGCKFSQSKNLKRHALKHTENGPNRYKCQLCGFSSHRSDKMKEHVQRVHTEKPVQLELSE 419
Query: 272 TMDRLSMLPDDFE 234
T+D S PDDFE
Sbjct: 420 TVD--SSFPDDFE 430
>AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein.
Length = 2285
Score = 30.3 bits (65), Expect = 3.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELS 168
D P+LR LR MD ++ L D+FE + + +E + S + + LS
Sbjct: 937 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEEESKQASRIFTEECLS 983
>AJ011924-1|CAA09869.1| 2396|Drosophila melanogaster Kakapo protein.
Length = 2396
Score = 30.3 bits (65), Expect = 3.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELS 168
D P+LR LR MD ++ L D+FE + + +E + S + + LS
Sbjct: 1048 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEEESKQASRIFTEECLS 1094
>BT023496-1|AAY84896.1| 2042|Drosophila melanogaster LP04448p
protein.
Length = 2042
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 284 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDEL 171
DL D +D LS +P DF KL+ ++W + + ++L
Sbjct: 268 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKL 305
>AJ249115-1|CAB55772.1| 2050|Drosophila melanogaster microtubule
associated protein protein.
Length = 2050
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 284 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDEL 171
DL D +D LS +P DF KL+ ++W + + ++L
Sbjct: 268 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKL 305
>AE014297-2141|AAF55269.2| 2049|Drosophila melanogaster CG5000-PA
protein.
Length = 2049
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 284 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDEL 171
DL D +D LS +P DF KL+ ++W + + ++L
Sbjct: 268 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKL 305
>Y09430-1|CAA70581.1| 4151|Drosophila melanogaster Kakapo protein.
Length = 4151
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 2 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 33
>AY058503-1|AAL13732.1| 627|Drosophila melanogaster LD21207p
protein.
Length = 627
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 680 YKNAR--EREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLL 537
+KN+ E E + +++L+ + CTL+HL ++ A Y CS LL
Sbjct: 482 FKNSHFDEHESTERISKLFQIHCTLEHLLMMHIH-LNLANVYNDVCSELL 530
>AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short stop/Kakapo
long isoform protein.
Length = 5201
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 1048 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1079
>AE014297-4718|AAF57128.1| 641|Drosophila melanogaster CG18729-PA
protein.
Length = 641
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 680 YKNAR--EREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLL 537
+KN+ E E + +++L+ + CTL+HL ++ A Y CS LL
Sbjct: 496 FKNSHFDEHESTERISKLFQIHCTLEHLLMMHIH-LNLANVYNDVCSELL 544
>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
isoform H protein.
Length = 8805
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 1007 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1038
>AE013599-1791|AAM68562.1| 5160|Drosophila melanogaster CG18076-PC,
isoform C protein.
Length = 5160
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 1007 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1038
>AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-PA,
isoform A protein.
Length = 5501
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 1048 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1079
>AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-PE,
isoform E protein.
Length = 5201
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 1048 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1079
>AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-PB,
isoform B protein.
Length = 5390
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 937 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 968
>AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-PG,
isoform G protein.
Length = 5385
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 308 DMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 213
D P+LR LR MD ++ L D+FE + + +E
Sbjct: 937 DPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 968
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,789,359
Number of Sequences: 53049
Number of extensions: 783886
Number of successful extensions: 2153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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