Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c03
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical...   198   3e-51
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      31   1.1  
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC025715-8|AAK68439.2|  531|Caenorhabditis elegans Enhanced rnai...    30   1.8  
U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead trans...    30   2.4  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    28   9.8  
U41038-5|AAK29710.4|  519|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    28   9.8  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    28   9.8  

>AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical
           protein Y87G2A.10 protein.
          Length = 210

 Score =  198 bits (484), Expect = 3e-51
 Identities = 98/209 (46%), Positives = 140/209 (66%)
 Frame = -3

Query: 722 MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSR 543
           M      L  E++L++N  ERE+ +N++EL+AV+  L+HLEK + RD V A EY + C +
Sbjct: 1   MSSQNANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFK 60

Query: 542 LLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI 363
           L+ QYKV  + V      +IE F  KYRL CPAA+ERIRE +P  +KDD+GN  K+IA I
Sbjct: 61  LIDQYKVTMRLVHGAT--SIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASI 118

Query: 362 VSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSA 183
           V  FIT +D LRL  RA+D + P L DL + ++  S +P D     KV++W D+LS M+A
Sbjct: 119 VEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAA 178

Query: 182 SDELSEAQVRQLVFDLETSYGAFNKFLHK 96
           SDE+S+   RQ++FD+E++Y AFNK L++
Sbjct: 179 SDEISDEDARQMIFDVESAYQAFNKALNE 207


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 284 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKF 105
           D  D  D LS +PD F+  ++ ++W ++   +    +L  A  +    D + +YGA  + 
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347

Query: 104 LHK 96
           L K
Sbjct: 348 LQK 350


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 284 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKF 105
           D  D  D LS +PD F+  ++ ++W ++   +    +L  A  +    D + +YGA  + 
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347

Query: 104 LHK 96
           L K
Sbjct: 348 LQK 350


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -3

Query: 275 DTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLHK 96
           D  D+ +++ ++F+G +    W+D  S+  A ++ S++ V+   +  E  +G FN F   
Sbjct: 458 DVKDQTTLIINNFQGMIDSLNWMDTFSKNRAHNK-SDSLVKNFGWP-EAMFGDFNDFTTV 515

Query: 95  D 93
           D
Sbjct: 516 D 516


>AC025715-8|AAK68439.2|  531|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 5 protein.
          Length = 531

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
 Frame = -3

Query: 539 LVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTN-----KY 375
           LV    ++   Q  EF NI +  AK+++         R ++P+L+ +  G  N     K 
Sbjct: 139 LVHLSDSWTDTQCTEFRNIVSKFAKFQITANQCDVDFRSDRPSLLVNLYGLPNGTEIDKK 198

Query: 374 IAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSML 249
           +A      +++ + +  +F    M+ P+L +L    D L ++
Sbjct: 199 VAIEEICAVSMQNVMVSQFPTNFMVNPKLEELDKEQDHLDVI 240


>U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 5 protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
 Frame = +3

Query: 357 RYNFCNVFISVPFVI--LDEIRFVLSYSFQSSRTV*---PVFSNKSFNIGKLISLYLFES 521
           +Y    +F S+ FV   + E  FV+S   + S+++     +F +  + I K  S YL+ +
Sbjct: 2   QYALTVIFQSILFVQCQVGEAAFVISQEHEVSKSISINMTLFPSIKWIIHK--SFYLYLT 59

Query: 522 HFVLHEETTACRRV---FLCSHTITHVCLLQVLKGTDDSIELSHVIM 653
           +FV+ ++T  C +    +  SH++  V   +  K T  SI  S   M
Sbjct: 60  YFVMSQQTLPCFQAADSYNYSHSLPKVQFARFSKYTPQSISYSSTQM 106


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 477 SFNIGKLISLYLFESHFV-LHEETTACRRVFLCSHTITHVCLLQ 605
           +F IGK I+      H V LHEE   C R+ L    I+ + + Q
Sbjct: 38  AFPIGKFIATCFLSFHEVKLHEELDKCARLLLLGAIISAIPIFQ 81


>Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical
           protein T05G5.9b protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 308 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 213
           DMI  ELRDL   +D+L+  L D  E  +K QE
Sbjct: 122 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 154


>Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical
           protein T05G5.9a protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 308 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 213
           DMI  ELRDL   +D+L+  L D  E  +K QE
Sbjct: 124 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 156


>Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical
           protein F02A9.7 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 645 VIMLFSFTRIFVQFNLFIQFRTCILHLYYFFTDL*QSQYQIMKQTRETS 791
           +I++F+   +  QF+LFI    C  + +  F D     Y IM+ T + S
Sbjct: 4   LILIFTLPTVISQFHLFIVI-NCDSYCHVTFRDNEMQYYSIMENTAQIS 51


>Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical
           protein F40G12.10 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 581 CVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRE 423
           C     Y A  +       +A +++QA E PNI+      R   PAA+E + +
Sbjct: 336 CAIVSNYGAGRAGSFFVAVLAIEKLQAGEAPNIKEIALSVRSQRPAAIETLSQ 388


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 190 CQHRMNCPKPKCDSWCSTWRPH 125
           C  R NC  P CD    T RPH
Sbjct: 453 CGSRENCQDPCCDPLTCTLRPH 474


>U41038-5|AAK29710.4|  519|Caenorhabditis elegans Hypothetical
           protein F59C12.3 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = -3

Query: 440 LERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDR 261
           LER+  +      D        +A I   F T +DKL+ E    D+I  ELR  RD    
Sbjct: 369 LERMVNDLRKTHGDKTEQRKSTLATITDNFETQVDKLKEESYEKDLIINELRSERDKYAA 428

Query: 260 LSMLPDDFEGKLKVQEWLDKLSE 192
           +       E   +++E   K+ E
Sbjct: 429 MVDKNSGDEALSRMEEIRQKIQE 451


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 190 CQHRMNCPKPKCDSWCSTWRPH 125
           C  R NC  P CD    T RPH
Sbjct: 453 CGSRENCQDPCCDPLTCTLRPH 474


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 283 TFATPWTGSACSLMTLK-GNSRCRNG*ISYLRCQHRMNCPKPKCDS 149
           TFA  W   +  + T+    S CR    SY    H+  CPKP  +S
Sbjct: 57  TFAKKWVDRSRHIPTIPLYKSTCR----SYSHFHHQYTCPKPSSES 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,466
Number of Sequences: 27780
Number of extensions: 404437
Number of successful extensions: 1174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)