Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c02
         (181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.78 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   7.2  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    18   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 22  QFVSN*MLC*PPLSYRGYREEVH 90
           Q + N  L  PP     YR+EVH
Sbjct: 53  QVLPNGNLVFPPFRAEDYRQEVH 75


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 148 HYTHYHV 168
           HY HYH+
Sbjct: 7   HYQHYHI 13


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +1

Query: 133 NQ*RKHYTHYH 165
           NQ   HY H H
Sbjct: 419 NQDNNHYNHNH 429


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 178 ACQIHGS 158
           AC+IHGS
Sbjct: 441 ACRIHGS 447


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 107  LHNA*KIH*INKENITHTTMYLTRI 181
            LH+A  +   +  N+T+ T  LT I
Sbjct: 942  LHSAQSVVASSASNVTNVTTNLTTI 966


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 108 YIMHKRYIKSIKKTLHTLP 164
           Y+M      S KKT H LP
Sbjct: 52  YLMPNIGYGSNKKTRHMLP 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,895
Number of Sequences: 438
Number of extensions: 684
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)