Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    27   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.6  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.6  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   5.6  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   5.6  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   7.4  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   7.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.8  
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ...    25   9.8  

>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 421 KQDKQYGKHVYTVSGDEDHIRAELFK---NGPVEGAFTV 314
           +QDKQ G  V+T++ D  H++  +F+     P EG + V
Sbjct: 17  QQDKQAGIQVWTINDDISHLKG-MFRGPEGTPYEGGYFV 54


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 336  GPFLNNSARMWSSSPDTVYTCFPYCLSCL*LTSYPDS 446
            GP  N   + W S    +Y   P   SC+  T Y +S
Sbjct: 2009 GPINNYMIKSWGSRLSYIYAFKPLICSCVPATEYLES 2045


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 352 LFKNGPVEGAFTVY--SDLLSYKSGVYKHTQGDALGGHAV 239
           ++ NGPV G  T+Y  S++ S  S  Y +T   +L   ++
Sbjct: 46  IYTNGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSI 85


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 259 ALGGHAVKILGWGVENDNKYWLIANSWNSDWGDNGFF 149
           +L G  VK+ G  V+ND+ YW  A++ N+  G   FF
Sbjct: 559 SLKGENVKLKG--VQNDHAYWSSASNPNNVSGAFRFF 593


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 77  TLGNS*NQYFYNNHFTYLKWW 15
           T G+  N + Y+N++TY K+W
Sbjct: 196 TQGDFSNIWVYSNNYTYCKYW 216


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 186 TRGTQIGETMASSKFCAARITAVLRAPLLRVN 91
           T+G  IG  + S   CA  ++ + + PL+ VN
Sbjct: 85  TKGPGIGAPLNSVALCARMLSLIHKKPLVAVN 116


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 Q*SSPRKILKKPLSPQSEFHEFAISQYLLSFSTPQPNILTACPPRAS 263
           Q ++P K+ K  + P+ E+H    +    S   P+ N++T+   +AS
Sbjct: 73  QATAPEKLPKDVIIPEEEYHTDTFNVVKESNDKPKENLVTSEECKAS 119


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 565 SYNSSQGCRPYEIPPCEHHVPGNRMP 488
           S N  + C P+  PP +HH P  R P
Sbjct: 153 SSNHVRSCPPF--PPTQHHHPHTRPP 176


>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 ILKKPLSPQSEFHEFAISQYLLSFSTPQPNILTACPPRASPCV 272
           +L + +S Q    EFA   Y  + + P+P +++  PP+A+P V
Sbjct: 6   LLNEKISVQQARQEFA--NY--ANNIPEPMMVSVAPPKANPSV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,249
Number of Sequences: 5004
Number of extensions: 83098
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)