Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b20
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   236   2e-63
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.30 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.2  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   1.2  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.7  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  236 bits (578), Expect = 2e-63
 Identities = 108/162 (66%), Positives = 133/162 (82%)
 Frame = -2

Query: 745 YKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRK 566
           YKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   +V+  STDS ++HLA+INTPRK
Sbjct: 30  YKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRK 89

Query: 565 QGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSV 386
           +GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF+ID K  LRQITINDLPVGRSV
Sbjct: 90  EGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSV 149

Query: 385 EETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 260
           +E LRL+ AFQF ++HGEVCPANW  G+ TI  DTK  ++YF
Sbjct: 150 DEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNPEKYF 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 362 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 490
           L Q Q L  +    ++ D DL PEV  ++ +EES  G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 436 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 266
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 LAPGLQLAGHTSPCLSVNWN 359
           L P  +L  HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 109 VNILNFTLL*KIISFFSIPEQFTFS 183
           + I NF LL +I +FFS+ ++ TFS
Sbjct: 397 LRIHNFPLLGRIHNFFSVAKETTFS 421


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 569 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 405
           +A R+  H H +   +   H  R  S   G  H    +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,044
Number of Sequences: 5004
Number of extensions: 45947
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)