Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b17
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.40 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.7  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    27   3.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   8.5  

>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 15  VSFKSIEPFLHTICNSLCGSFSNRNLFGCESSMNLPSFNILSSTVIFSAIRFV-AGKLFI 191
           +S K  + F+H + N  C SFS+  L G +  +NL SF + +  + +   ++V   K  I
Sbjct: 114 ISGKDWKSFIHDV-NMAC-SFSDVALMGLDQILNLVSFGLSAYVISYYVEKYVDKAKFPI 171

Query: 192 ISG 200
           I G
Sbjct: 172 IKG 174


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = -2

Query: 304  IQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIINNLPATNLIAEKITV-DDKIL 128
            +++ + S E+    S L+  +++    +  +EL + DI+ ++ +T  + +++T+ ++ IL
Sbjct: 2445 LESKVLSLEIQSEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGIL 2504

Query: 127  KLGRFMDDSHPKRF 86
             LG+ +    P+ F
Sbjct: 2505 ALGKALLADIPQSF 2518


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = -2

Query: 463 STHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITGFSGNIQASLKS 284
           S H G + +   Y    H   +     L HL RS+  D+I+         + NI+  +  
Sbjct: 181 SAHVGYLEMYQ-YVIARHLVAICKQYNLIHLPRSLPADVIESAKSETPAMNTNIEQGVTQ 239

Query: 283 GEVYMHASQLMEKSSIFIHEKGKVELLIPD 194
             + ++  QL  + SI   +  K++ +  D
Sbjct: 240 PSL-VNTEQLSHQQSISSTKSSKLDEISAD 268


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -2

Query: 544 QASNIELKTGLNSGIKCHNVMANSFIVSTHAGPIAVKSCYSDNSHFTTLMGN 389
           Q++N+E  + ++  ++  NV  + F+   HAG +        N     L+ N
Sbjct: 267 QSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAMNAETNPRTAELIAN 318


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -2

Query: 313 SGNIQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIINNLPATNLIAEKITVDDK 134
           SGN + S     ++    QL       I    +++  +     ++    LIA  + + D+
Sbjct: 85  SGNTKVSTLISSIHRSEEQLKNSKQSLIGHSTEIQNNLKHK-QDVENEKLIASNLLLLDQ 143

Query: 133 ILKLGRFMDDSHP 95
           ILK  +  D SHP
Sbjct: 144 ILKFLKSNDSSHP 156


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = -2

Query: 418  NSHFTTL---MGNIRLDHLHRSVLIDIIQRGNLHITGFSGNIQASLKSGEVYMHASQLME 248
            N HF  L   M N++++H + S L+    +  +++   +   QASLKS    +++    +
Sbjct: 905  NEHFIMLSDSMANLQVEHENMSALL---LKEKMYLKNQTVE-QASLKSEIASLNSQLAKQ 960

Query: 247  KSSIFIHEKGKVELLIPDIINNLPATNLIAEKITVDDKIL 128
            KS I    +G +E +I + +  +  +  + ++I   +K L
Sbjct: 961  KSEIEQAFQGDMEAIIAENLEIMVESQSLEDEIFRKEKQL 1000


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 226 EKGKVELLIPDIINNLPAT--NLIAE-KITVDDKILKLGRFMD 107
           EK  + L +  I+ +   T  NL+ E +I +  KILKLG+ +D
Sbjct: 390 EKDNIALQLGSIVFDQSPTLNNLLVEMEILIRSKILKLGKSLD 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,059
Number of Sequences: 5004
Number of extensions: 58472
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)