Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b17
(737 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033777-1|AAH33777.1| 725|Homo sapiens amyotrophic lateral scl... 31 3.3
BC021574-1|AAH21574.1| 346|Homo sapiens glucose 6 phosphatase, ... 31 3.3
BC002494-1|AAH02494.2| 346|Homo sapiens glucose 6 phosphatase, ... 31 3.3
AY032876-1|AAK66819.2| 725|Homo sapiens protein kinase NYD-SP24... 31 3.3
AF454946-1|AAL62330.1| 725|Homo sapiens calcium-response factor... 31 3.3
AC010900-3|AAY24288.1| 725|Homo sapiens unknown protein. 31 3.3
Z98884-1|CAI21433.1| 1673|Homo sapiens calmodulin binding transc... 31 4.3
Z98052-1|CAI21596.1| 1673|Homo sapiens calmodulin binding transc... 31 4.3
Z97635-1|CAI20961.1| 1673|Homo sapiens calmodulin binding transc... 31 4.3
AL596210-1|CAI17064.1| 1673|Homo sapiens calmodulin binding tran... 31 4.3
AL590128-1|CAH72347.1| 1673|Homo sapiens calmodulin binding tran... 31 4.3
AL365194-1|CAI21790.1| 1673|Homo sapiens calmodulin binding tran... 31 4.3
AL359881-1|CAH72663.1| 1673|Homo sapiens calmodulin binding tran... 31 4.3
AB020640-1|BAA74856.3| 1734|Homo sapiens KIAA0833 protein protein. 31 4.3
>BC033777-1|AAH33777.1| 725|Homo sapiens amyotrophic lateral
sclerosis 2 (juvenile) chromosome region, candidate 8
protein.
Length = 725
Score = 31.5 bits (68), Expect = 3.3
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 487 VMANSFIVSTHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITG-FS 311
VM N+ ++ + + +C + N+ + MGN+ + + ++++ G++ TG
Sbjct: 602 VMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLE 661
Query: 310 GNIQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIIN--NLPATNLIAEKITVDD 137
G + L G+V Q+++ S I E + + + + PA ++ A+K TVD
Sbjct: 662 GTVHRIL-LGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKK-TVDY 719
Query: 136 KIL 128
K L
Sbjct: 720 KKL 722
>BC021574-1|AAH21574.1| 346|Homo sapiens glucose 6 phosphatase,
catalytic, 3 protein.
Length = 346
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 35 AILTHYMQLIM-WFLFKSKPFWM*IIHES 118
+++T ++ LI WFLF +PFW +HES
Sbjct: 61 SLITEWLNLIFKWFLFGDRPFWW--VHES 87
>BC002494-1|AAH02494.2| 346|Homo sapiens glucose 6 phosphatase,
catalytic, 3 protein.
Length = 346
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 35 AILTHYMQLIM-WFLFKSKPFWM*IIHES 118
+++T ++ LI WFLF +PFW +HES
Sbjct: 61 SLITEWLNLIFKWFLFGDRPFWW--VHES 87
>AY032876-1|AAK66819.2| 725|Homo sapiens protein kinase NYD-SP24
protein.
Length = 725
Score = 31.5 bits (68), Expect = 3.3
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 487 VMANSFIVSTHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITG-FS 311
VM N+ ++ + + +C + N+ + MGN+ + + ++++ G++ TG
Sbjct: 602 VMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLE 661
Query: 310 GNIQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIIN--NLPATNLIAEKITVDD 137
G + L G+V Q+++ S I E + + + + PA ++ A+K TVD
Sbjct: 662 GTVHRIL-LGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKK-TVDY 719
Query: 136 KIL 128
K L
Sbjct: 720 KKL 722
>AF454946-1|AAL62330.1| 725|Homo sapiens calcium-response factor
CaRF protein.
Length = 725
Score = 31.5 bits (68), Expect = 3.3
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 487 VMANSFIVSTHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITG-FS 311
VM N+ ++ + + +C + N+ + MGN+ + + ++++ G++ TG
Sbjct: 602 VMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLE 661
Query: 310 GNIQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIIN--NLPATNLIAEKITVDD 137
G + L G+V Q+++ S I E + + + + PA ++ A+K TVD
Sbjct: 662 GTVHRIL-LGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKK-TVDY 719
Query: 136 KIL 128
K L
Sbjct: 720 KKL 722
>AC010900-3|AAY24288.1| 725|Homo sapiens unknown protein.
Length = 725
Score = 31.5 bits (68), Expect = 3.3
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = -2
Query: 487 VMANSFIVSTHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITG-FS 311
VM N+ ++ + + +C + N+ + MGN+ + + ++++ G++ TG
Sbjct: 602 VMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNLE 661
Query: 310 GNIQASLKSGEVYMHASQLMEKSSIFIHEKGKVELLIPDIIN--NLPATNLIAEKITVDD 137
G + L G+V Q+++ S I E + + + + PA ++ A+K TVD
Sbjct: 662 GTVHRIL-LGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKK-TVDY 719
Query: 136 KIL 128
K L
Sbjct: 720 KKL 722
>Z98884-1|CAI21433.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>Z98052-1|CAI21596.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>Z97635-1|CAI20961.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>AL596210-1|CAI17064.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>AL590128-1|CAH72347.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>AL365194-1|CAI21790.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>AL359881-1|CAH72663.1| 1673|Homo sapiens calmodulin binding
transcription activator 1 protein.
Length = 1673
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 671 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 705
>AB020640-1|BAA74856.3| 1734|Homo sapiens KIAA0833 protein protein.
Length = 1734
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 334 NLHITGFSGNIQASLKSGEVYMHASQLMEKSSIFI 230
+LH+ F N QA GEV M SQ E S + +
Sbjct: 732 SLHLMQFQANFQAMTAEGEVTMETSQAAEGSEVLL 766
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,568,014
Number of Sequences: 237096
Number of extensions: 2035385
Number of successful extensions: 3187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3187
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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