Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b17
         (737 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061426-1|AAL28974.1|  376|Drosophila melanogaster LD35843p pro...    64   1e-10
AE013599-2074|AAF58127.1|  376|Drosophila melanogaster CG8187-PA...    64   1e-10

>AY061426-1|AAL28974.1|  376|Drosophila melanogaster LD35843p
           protein.
          Length = 376

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 39/136 (28%), Positives = 68/136 (50%)
 Frame = -2

Query: 643 VKTQKGAVNVKDIKAQNIKIXXXXXXXXXXGRIQASNIELKTGLNSGIKCHNVMANSFIV 464
           VK ++G +  K+IKA +I +          G +     ++++  N  I    +  +S   
Sbjct: 148 VKAKEGILT-KNIKATHINLYSENGNINCQGTLLGKITQIESQ-NGNIAMDKLQGDSLNC 205

Query: 463 STHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITGFSGNIQASLKS 284
           ST AG I    CY + S F T  G + L ++H+S  + + Q  +L++TG  GNIQ + K 
Sbjct: 206 STKAGSIVTDCCYVEKSKFQTQTGRLELKNVHKSSEVHVHQSSDLNMTGVHGNIQITTKG 265

Query: 283 GEVYMHASQLMEKSSI 236
           G + +  S+L+  + I
Sbjct: 266 GNLNVQLSELVGSNKI 281


>AE013599-2074|AAF58127.1|  376|Drosophila melanogaster CG8187-PA
           protein.
          Length = 376

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 39/136 (28%), Positives = 68/136 (50%)
 Frame = -2

Query: 643 VKTQKGAVNVKDIKAQNIKIXXXXXXXXXXGRIQASNIELKTGLNSGIKCHNVMANSFIV 464
           VK ++G +  K+IKA +I +          G +     ++++  N  I    +  +S   
Sbjct: 148 VKAKEGILT-KNIKATHINLYSENGNINCQGTLLGKITQIESQ-NGNIAMDKLQGDSLNC 205

Query: 463 STHAGPIAVKSCYSDNSHFTTLMGNIRLDHLHRSVLIDIIQRGNLHITGFSGNIQASLKS 284
           ST AG I    CY + S F T  G + L ++H+S  + + Q  +L++TG  GNIQ + K 
Sbjct: 206 STKAGSIVTDCCYVEKSKFQTQTGRLELKNVHKSSEVHVHQSSDLNMTGVHGNIQITTKG 265

Query: 283 GEVYMHASQLMEKSSI 236
           G + +  S+L+  + I
Sbjct: 266 GNLNVQLSELVGSNKI 281


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,898,925
Number of Sequences: 53049
Number of extensions: 588480
Number of successful extensions: 1360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)