Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b15
         (816 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069750-1|AAL39895.1|  228|Drosophila melanogaster LP10861p pro...    31   1.9  
AE014296-144|AAN11453.1|  228|Drosophila melanogaster CG13887-PC...    31   1.9  
AE014296-143|AAF47419.1|  228|Drosophila melanogaster CG13887-PB...    31   1.9  

>AY069750-1|AAL39895.1|  228|Drosophila melanogaster LP10861p
           protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = -2

Query: 815 EKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILA 636
           ++N+ I+GF++FL +V   ++ L++   + A +  +SE       S         EN   
Sbjct: 98  QRNFYISGFAIFLALV---IRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLEN--K 152

Query: 635 NLLRVKRSISYETIMFANDMREQFKTMIKSMD-TPQSQEPLSSIVESTN 492
           N  + K +    T++  N +RE+ + +   ++   + +E + S  ES N
Sbjct: 153 NTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESIN 201


>AE014296-144|AAN11453.1|  228|Drosophila melanogaster CG13887-PC,
           isoform C protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = -2

Query: 815 EKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILA 636
           ++N+ I+GF++FL +V   ++ L++   + A +  +SE       S         EN   
Sbjct: 98  QRNFYISGFAIFLALV---IRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLEN--K 152

Query: 635 NLLRVKRSISYETIMFANDMREQFKTMIKSMD-TPQSQEPLSSIVESTN 492
           N  + K +    T++  N +RE+ + +   ++   + +E + S  ES N
Sbjct: 153 NTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESIN 201


>AE014296-143|AAF47419.1|  228|Drosophila melanogaster CG13887-PB,
           isoform B protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = -2

Query: 815 EKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILA 636
           ++N+ I+GF++FL +V   ++ L++   + A +  +SE       S         EN   
Sbjct: 98  QRNFYISGFAIFLALV---IRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLEN--K 152

Query: 635 NLLRVKRSISYETIMFANDMREQFKTMIKSMD-TPQSQEPLSSIVESTN 492
           N  + K +    T++  N +RE+ + +   ++   + +E + S  ES N
Sbjct: 153 NTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESIN 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,760,685
Number of Sequences: 53049
Number of extensions: 666790
Number of successful extensions: 1645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)