Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b14
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293... 44 2e-04
09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614... 33 0.18
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 33 0.24
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 32 0.56
05_01_0143 - 944169-947273 31 1.3
02_02_0286 - 8589736-8590857 30 1.7
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 30 2.2
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 30 2.2
03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689 29 3.0
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 5.2
03_02_0520 + 9092020-9092079,9092253-9093047 29 5.2
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 29 5.2
01_01_0810 - 6297944-6297985,6298057-6298185,6298364-6298769,629... 29 5.2
06_01_0099 + 824557-825532,826090-826245,826422-828064 28 6.9
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843... 28 6.9
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 6.9
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 28 6.9
12_02_0455 - 19203028-19203186,19203485-19203859,19203981-192040... 28 9.1
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 9.1
08_02_1535 + 27682812-27683528 28 9.1
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 28 9.1
>11_04_0391 +
17127309-17127449,17127886-17127950,17129209-17129305,
17129729-17130193,17130505-17130528
Length = 263
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Frame = -3
Query: 392 ENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDFRF-------ERQ 234
EN + ++ SY C +E C K + R H + +H+ PK F F +RQ
Sbjct: 86 ENFEDHYRTRHTASCSYECLVEGCGVKLKSYKSRQQHLLDKHQFPKSFEFFKKARPSQRQ 145
Query: 233 K-KDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDC 69
+ K++ + DE ++ K + ++Y K+ K+S++ + C
Sbjct: 146 RNKNQKQRQTVHKGDETSETLMDVDGKKSSRYMNSRYRPKQH-DGKESKENEHSSC 200
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 530 CSIPGCKHIADTLLDYENHYNATHRYSCA 444
C I GC D L ++E+HY H SC+
Sbjct: 73 CPISGCGAHLDCLENFEDHYRTRHTASCS 101
>09_04_0726 +
19758916-19759098,19759774-19760318,19760581-19761492,
19762067-19762328
Length = 633
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/84 (29%), Positives = 38/84 (45%)
Frame = -3
Query: 305 NTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKY 126
N D LD E +D + Q N+ ++ V++ N N K K K
Sbjct: 46 NPFDLLDEEEEEEEEKEDEVYSEQPVSYNEQKHS--VNKKPGNAVPETNKKSKKKKKKSK 103
Query: 125 AGKKFTSDKKSRDETNMDCSMEDL 54
A K+ ++ KSRDE ++D +EDL
Sbjct: 104 ADKQVST--KSRDEKSLDSILEDL 125
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = -3
Query: 359 EKKPS-YCCYIEECKQKFNNTADRLDHCVREHRIPKDFRFERQKK-----DKNKMPNAMD 198
+KKP+ Y Y +E ++N+ D D + P D FE + DK+K ++ +
Sbjct: 188 KKKPTKYNAYEDEDDDEYNDENDDEDDDDADEDDPDDVDFEPESDTEKAADKDKFVDSEN 247
Query: 197 VDEAKSNKFHLNNSKQKTFSKNKYAGKK 114
DE + ++ L++ + F +NK K+
Sbjct: 248 SDEEEDDELELSDDDEDDFVENKRQCKR 275
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -3
Query: 320 KQKFNNTADRLDHCVREHRIPKD-FRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKT 144
K+K+NNT LD R + +D ++ + +D + D +K + +SK++
Sbjct: 302 KEKYNNTEKDLDRHSRRKDVSEDKDKWPAENRDGDDRKTLSRYDHSK-----VRSSKEQR 356
Query: 143 FSKNKYAGK---KFTSDKKSRDETNMD 72
F +KY K + DK+ +D+ +D
Sbjct: 357 FDDDKYKEKYKDDYERDKRQQDDKCLD 383
>05_01_0143 - 944169-947273
Length = 1034
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Frame = -3
Query: 413 FLDLHIQENHDSYFAVMAE----KKPSYCCYIEECKQKFNNTADRLDHCVRE-----HRI 261
F+ + E DS FA AE ++P +EE + + A+R DH E H I
Sbjct: 7 FILFLLGEEADS-FAKRAEMYYKRRPEVISSVEEAYRAYRALAERYDHISGELHKANHTI 65
Query: 260 ----PKDFRFERQKKDKNKMPNAMD-VDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKK 96
P ++ ++D + +P A VD K +K + +K K + +G K K
Sbjct: 66 ATAFPDQVQYSMLEEDDDNLPKAFTAVDPRKIHKSTVEGLMKK--KKGEKSGLK-DGGKN 122
Query: 95 SRDETNMDCSMEDLKDSLPK*IILS*KK 12
S D+ N + + E++ + ++L +K
Sbjct: 123 SGDKINKENAQEEISRLQKEILVLQTQK 150
>02_02_0286 - 8589736-8590857
Length = 373
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 542 KQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKK 432
K +PC P C I Y N+ A RY C +C++
Sbjct: 42 KSSPCC-PRCNSIKTKFCYYNNYSMAQPRYFCRECRR 77
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Frame = -3
Query: 227 DKNKMPNAMDVDEAKSNKFHLNNS------KQKTFSKNKYAGKKF--TSD--KKSRDETN 78
+++ PNA D+ A K HLNN+ + K F+ YAG+ TS +K+RD +
Sbjct: 605 EESTFPNATDLTFANKLKQHLNNNSCFRGERGKAFAVRHYAGEVAYDTSGFLEKNRDLLH 664
Query: 77 MDC--SMEDLKDSLPK 36
MD + K SLP+
Sbjct: 665 MDSIQFLAKCKSSLPQ 680
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -3
Query: 455 YSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCV 276
YSCA C + L+ H+QE H + + + S C F NT H V
Sbjct: 497 YSCAVCMDSFTNRRVLERHVQEKHGAQYL-----QYSTLLRCISCNSNFLNTDLLWQHIV 551
Query: 275 REH 267
+H
Sbjct: 552 SDH 554
>03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689
Length = 157
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 278 VREHRIPKDFRFERQKKDKNKM---PNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFT 108
V EH PK E K+ + K+ P+ +AK + ++ KQ+ +K K A KFT
Sbjct: 51 VTEHTAPKPKDPEPLKEKEEKIYLGPHGAPPSQAKQQEINIVGRKQRFRNKLKEADNKFT 110
Query: 107 SD-KKSRDET 81
+ ++++ ET
Sbjct: 111 GNAQENKVET 120
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -3
Query: 614 FIHDKQPTRLGIYDVDDGNYN 552
F+H+KQ +LG+++ +G +N
Sbjct: 460 FVHEKQAAKLGLFETGEGYFN 480
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = -3
Query: 374 FAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMP--NAM 201
F +A++ SY EC NNT D L + EH ++ K MP N +
Sbjct: 192 FLTLAQQAASY----PECTLLVNNTLDILSKQIEEHLSGCASTSDQSATHKEVMPPNNLL 247
Query: 200 DVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKK 96
K + H+ + K+K +N K+ T+ K+
Sbjct: 248 SNARLKKKEVHVRSLKRK---RNWLDKKRDTTQKR 279
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 377 YFAVMAEKKPSYCCYIEECK 318
YFA M K +YCC E CK
Sbjct: 484 YFADMFSKSANYCCASEACK 503
>01_01_0810 -
6297944-6297985,6298057-6298185,6298364-6298769,
6299627-6299743,6300351-6300397
Length = 246
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = -3
Query: 374 FAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDV 195
F +A++ SY EC NNT D L + EH ++ K MP +
Sbjct: 126 FLTLAQQAASY----PECTLLVNNTLDILSKQIEEHLSGYASTSDQSATHKEVMPPNNLL 181
Query: 194 DEAKSNKFHLNNSKQKTF---SKNKYAGKKFTSDKKSRDE 84
A+ K ++Q T + + A F DK+ E
Sbjct: 182 SNARLKKKEEQKTRQNTLHAGAATQVAEDSFAMDKEESGE 221
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 572 VDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSP 417
+DD K P S+P C+++ L + N ++ HR + A LP P
Sbjct: 374 MDDEVSYAAHKSQPVSVPTCQYLCFDFLTHPNSFSPHHR-APAMAPYPLPPP 424
>02_05_0847 +
32183249-32183486,32184001-32184118,32184231-32184376,
32184591-32186080
Length = 663
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 398 IQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRI 261
+ +++Y A + EK E KF N D+L C+RE R+
Sbjct: 448 VSRYYEAYLARVDEKIGFQIRIFPEKPIKFENMYDQLTRCIREQRL 493
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/94 (18%), Positives = 37/94 (39%)
Frame = -3
Query: 323 CKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKT 144
C N D + H + + R + ++ + + D D + K ++ K+
Sbjct: 27 CSDDMRNGDDE-EKKYSHHDMKNNLRNDANEEKRKSSDDMRDGDFEEKKKCSRHDMKKNL 85
Query: 143 FSKNKYAGKKFTSDKKSRDETNMDCSMEDLKDSL 42
+ +K + D + D+ CS +D+K +L
Sbjct: 86 RNDANEEKRKSSDDMRDGDDEEKKCSRQDMKKNL 119
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = -3
Query: 569 DDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQE 390
++ + + + C PGC + H A H+Y QC + H L +I+
Sbjct: 175 EESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQY--VQC-DICGEKH-LKKNIKR 230
Query: 389 NHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDF 249
+ ++ V + ++ C E C+ F+N ++ H H K F
Sbjct: 231 HLRAHEEVPSTERIK--CSFEGCECSFSNKSNLTKHIKASHDQVKPF 275
>12_02_0455 -
19203028-19203186,19203485-19203859,19203981-19204090,
19204200-19204243,19204435-19204635,19204937-19205079,
19205194-19205487,19205956-19206003
Length = 457
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 190 SSTSIALGILFLSFFCLSKRKSLGILCSRTQWSNL 294
SST I LGI+F S C S L + QW L
Sbjct: 284 SSTFIGLGIVFFSGVCFSLFSPAFNLATNDQWHTL 318
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 682 FIFFGCQPFWNQLNFRRRQW 741
F+ GC PFW N QW
Sbjct: 201 FVKTGCTPFWTYANITPNQW 220
>08_02_1535 + 27682812-27683528
Length = 238
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 449 TSTCASRCNGFRNLTVYQLCVYILVCCTEF 538
++T + CNGFR LT C+ ++C F
Sbjct: 36 SATIETMCNGFRRLTDVYSCMDEMMCLPSF 65
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 566 DGNYNTQFKQTPCSIPGCKHIADTLLDY--ENHYNATHRYSCAQCKKV 429
+ N + +PG +AD L + +++YSC +CKK+
Sbjct: 163 ESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKL 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,422,009
Number of Sequences: 37544
Number of extensions: 447157
Number of successful extensions: 1271
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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