Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b14
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 38 0.010
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 36 0.040
U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF024498-4|AAF39805.2| 319|Caenorhabditis elegans Serpentine re... 33 0.16
AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical... 32 0.38
AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical... 32 0.50
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 31 0.66
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 31 0.87
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 31 0.87
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 31 0.87
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 31 0.87
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 31 0.87
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 31 0.87
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 31 0.87
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 31 0.87
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 31 1.1
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical ... 30 2.0
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 30 2.0
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 29 2.6
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 29 2.6
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 29 2.6
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 29 2.6
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 29 2.6
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical p... 29 4.6
AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc... 29 4.6
AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine re... 29 4.6
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 28 6.1
U61949-4|AAB03150.2| 414|Caenorhabditis elegans Hypothetical pr... 28 6.1
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 28 6.1
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 28 6.1
AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical ... 28 6.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.1
AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical ... 28 6.1
Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical pr... 28 8.1
U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine rece... 28 8.1
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 28 8.1
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 8.1
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 28 8.1
AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine r... 28 8.1
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 8.1
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 37.5 bits (83), Expect = 0.010
Identities = 28/95 (29%), Positives = 44/95 (46%)
Frame = -3
Query: 320 KQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTF 141
++K + ++ D + KD + E +KKD +K D EAKS N SK+
Sbjct: 122 EKKSDKKDEKKDDKKEKDEEKKDDKKEDEKKDDDKKD---DKKEAKSKSKKSNKSKKSKK 178
Query: 140 SKNKYAGKKFTSDKKSRDETNMDCSMEDLKDSLPK 36
SK + K DKK D+ + D ++ KD+ K
Sbjct: 179 SKREKKDDKKDEDKKDDDKKDDDKKDDEKKDNEKK 213
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 35.5 bits (78), Expect = 0.040
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = -3
Query: 470 NATHRYSCAQCKKVLPSPHFLDLHIQEN--HDSYFAVMAEKKPSYCCYIEECKQKFNNTA 297
N RY+C C K L +H++ + + + K+ + +++ K +T
Sbjct: 503 NGKTRYACKDCNKTFGQLSNLKVHVRTHTGERPFKCEICTKEFTQLAHLQ--KHHLVHTG 560
Query: 296 DRLDHC-VREHRIPKDFRFERQKKDKN-KMPNAMDVDEAKSNKF-HLNNSKQKTFSKNKY 126
+R C + + R + + N + P DV +AK ++ HL K+ ++ Y
Sbjct: 561 ERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVCDAKFTQYVHLRLHKRLHANERPY 620
Query: 125 A----GKKFTSDKKSRDE-TNMDCSMEDLKDSL 42
+ GKK+ S R C ED+KDS+
Sbjct: 621 SCGTCGKKYISPSGLRTHWKTTTCKEEDMKDSM 653
>U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical
protein F26F4.8 protein.
Length = 329
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -3
Query: 533 PCSIPGCKHIADTLLDYENHYNATHRYS------CAQCKKV 429
PC GC + +T+L+ ENH N H + C C +V
Sbjct: 107 PCRAEGCDQLVETMLEGENHANTAHHVNGTVSIKCKDCSEV 147
>AF024498-4|AAF39805.2| 319|Caenorhabditis elegans Serpentine
receptor, class x protein102 protein.
Length = 319
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 169 WNLLDLASSTSIALGILFLSFFCLSKRKSLGILCSRTQWSNLSAVLLNFCLHSS 330
W +L LAS +A+ L FC K S ++CS SN+ +LL + +H++
Sbjct: 32 WIML-LASLLGMAMNFRVLQSFCKQKMSSFYLMCSSKTLSNM-CILLGYVVHNA 83
>AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical
protein Y71A12B.15 protein.
Length = 758
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 509 HIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKP 348
++ D D+ ++Y T RY A C+KVLP FLD + + +A+ P
Sbjct: 237 NVLDVSRDWPDNYRQTIRYFLA-CEKVLPELKFLDCSSAYLDEDLYKELAQSHP 289
>AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical
protein Y39B6A.47 protein.
Length = 887
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -3
Query: 245 FERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMD 72
FE QK+ ++ ++D DE+ ++ +LN+ + T + N++ DKK D N+D
Sbjct: 132 FETQKRSSGELSGSLDSDESSTDSVYLNDLQNLTKALNEFQAP--IKDKK--DIVNLD 185
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/100 (24%), Positives = 37/100 (37%)
Frame = -3
Query: 548 QFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFA 369
Q + C C+ ++ H TH C +V P + EN ++
Sbjct: 257 QKNEVNCKWRYCERSFKQTYEFTAH-KRTHTKQKLYCCEVCPKRYGR----LENLKTHRR 311
Query: 368 VMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDF 249
+KP Y C + C + F N +DR H R H K +
Sbjct: 312 THTGEKP-YHCNVPNCNKSFTNASDRSKHSKRTHSNEKPY 350
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Frame = -3
Query: 554 NTQFKQTPCSIPGCKHIADTLLDYENHYNATHR----YSC--AQCKKVLPSPHFLDLHIQ 393
+T K C++P C D H TH Y C C P L H++
Sbjct: 313 HTGEKPYHCNVPNCNKSFTNASDRSKHSKRTHSNEKPYCCDFGSCACAYTDPSSLRKHVK 372
Query: 392 ENHDSYFAV-MAEKK 351
H + A+ MA +K
Sbjct: 373 SKHPEHHAMKMAMRK 387
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 31.5 bits (68), Expect = 0.66
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = -3
Query: 452 SCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVR 273
SC C V L+ HI+++ + + + C +E C + ++ A + H
Sbjct: 274 SCMYCNFVFRQKALLESHIKKHTTTGKNEVMSESSGLICPVEHCTIRCDSIATVVRHMQV 333
Query: 272 EHRIPKDFRFER---QKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKY 126
H + + FER + + KM +++ +KF + K FSK+ Y
Sbjct: 334 THSV-NNIAFERVVFKNFHEFKMWRT-ELERLTMSKFSRTSGKTNKFSKSTY 383
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/80 (18%), Positives = 32/80 (40%)
Frame = -3
Query: 488 DYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKF 309
D + + +H++ C QC S +F + E H + E P ++C +
Sbjct: 2067 DVQGQVSESHKHKCVQCSIRNQSVYFSSYSLLELHGKLHQNLHELAPEDADDCQDCYETL 2126
Query: 308 NNTADRLDHCVREHRIPKDF 249
++ + + H + H + F
Sbjct: 2127 TSSFEVIVHRINHHHSRRCF 2146
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 242 ERQKKDKNKMPNA--MDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDC 69
E++K K M A DV + KS K K+K +K+K KK KSR ET+ D
Sbjct: 251 EKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSKSR-ETDDDS 309
Query: 68 SMEDLKD 48
D +D
Sbjct: 310 DGSDSED 316
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -3
Query: 386 HDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVRE--HRIPKDFRFERQKKDKNKM 213
HD + + + ++K Y +E K ++ D+L++ ++ + ++ ER+K+D ++
Sbjct: 1147 HDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRENELEREKRDYDEK 1206
Query: 212 PNAM--DVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETN 78
N++ + K N K K K S+ K+ + TN
Sbjct: 1207 INSLYGQNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALETTN 1253
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -3
Query: 386 HDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVRE--HRIPKDFRFERQKKDKNKM 213
HD + + + ++K Y +E K ++ D+L++ ++ + ++ ER+K+D ++
Sbjct: 1220 HDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRENELEREKRDYDEK 1279
Query: 212 PNAM--DVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETN 78
N++ + K N K K K S+ K+ + TN
Sbjct: 1280 INSLYGQNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALETTN 1326
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -3
Query: 386 HDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVRE--HRIPKDFRFERQKKDKNKM 213
HD + + + ++K Y +E K ++ D+L++ ++ + ++ ER+K+D ++
Sbjct: 1220 HDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRENELEREKRDYDEK 1279
Query: 212 PNAM--DVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETN 78
N++ + K N K K K S+ K+ + TN
Sbjct: 1280 INSLYGQNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALETTN 1326
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 242 ERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDCSM 63
E +KK K +E K + + K+K K + ++ DKK +DE N D
Sbjct: 117 EDKKKRKQMRDKKKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKDEKNDDDDE 176
Query: 62 EDLKDSLPK 36
ED K K
Sbjct: 177 EDKKKDKKK 185
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/80 (18%), Positives = 32/80 (40%)
Frame = -3
Query: 488 DYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKF 309
D + + +H++ C QC S +F + E H + E P ++C +
Sbjct: 2067 DVQGQVSESHKHKCVQCSIRNQSVYFSSYSLLELHGKLHQNLHELAPEDADDCQDCYETL 2126
Query: 308 NNTADRLDHCVREHRIPKDF 249
++ + + H + H + F
Sbjct: 2127 TSSFEVIVHRINHHHSRRCF 2146
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 242 ERQKKDKNKMPNA--MDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDC 69
E++K K M A DV + KS K K+K +K+K KK KSR ET+ D
Sbjct: 251 EKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSKSR-ETDDDS 309
Query: 68 SMEDLKD 48
D +D
Sbjct: 310 DGSDSED 316
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -3
Query: 482 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 303
EN + ++ C CK+ S + H E H A EK+ Y C I C++ FN
Sbjct: 441 ENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKESKYPCAI--CEEDFNF 497
Query: 302 TADRLDH 282
R H
Sbjct: 498 KGVREQH 504
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -3
Query: 482 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 303
EN + ++ C CK+ S + H E H A EK+ Y C I C++ FN
Sbjct: 441 ENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKESKYPCAI--CEEDFNF 497
Query: 302 TADRLDH 282
R H
Sbjct: 498 KGVREQH 504
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 230 KDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDK-KSRDET 81
+DK + P+ + +E K K+KT K K K+ T +K KS+DET
Sbjct: 121 EDKPERPDKLTEEEKPDAKEKKEIEKEKTKEKEKTKEKEKTQEKEKSKDET 171
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 218 KMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAG-KKFTSDKKSRDETNMDCSMEDLKDSL 42
K P + DVDEAK K NSK+ SK G KK +KS+ + + M + K
Sbjct: 69 KDPKSKDVDEAK--KPDPANSKKSNKSKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPER 126
Query: 41 P 39
P
Sbjct: 127 P 127
>Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -3
Query: 530 CSIPGCKHIADTLLDYENHYNATH---RYSCAQCKKVLPSPHFLDLH--IQENHDSY 375
C + GC + H+ TH R++C +CK H L LH I N D+Y
Sbjct: 361 CPMDGCNKVFKEKGSVHRHF-VTHIGMRFNCDKCKASYTQKHALMLHQKIHANPDAY 416
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -3
Query: 329 EECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFH---LNN 159
EE K+K + + +E R + + +KK+K K D + SN+ L++
Sbjct: 790 EERKRKKHKKHKKEKKSKKEKRDEDEDDLDTEKKEKKKERKYQDDKDEDSNRKEPRSLDD 849
Query: 158 SKQKTFSKNKYAGKKFTSDKKSRDETNMDCSMEDLKDSLPK 36
+ KN +A KK KK + + + ED K+ LPK
Sbjct: 850 EDKVELDKN-FADKK--EKKKGKWNEDEEDIFEDRKEELPK 887
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Frame = -3
Query: 329 EECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQ 150
E+ K++ +DR D R H D + R ++D K +DE K + +
Sbjct: 879 EDRKEELPKESDRRDRKDRRHDDEDDRKERRHERDSQK------IDEQDRKKERKRDRET 932
Query: 149 KTFSKNKYAGKKF---TSDKKSRDETNMDCSMEDLKDSLPK 36
+ + +K K DKK D + + E KD K
Sbjct: 933 EAYDSDKLQAPKTKVKREDKKRDDRKDYERDRERRKDDYEK 973
>Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical
protein F07C6.1 protein.
Length = 329
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 515 CKHIADT--LLDY-ENHYNATHRYSCAQCKKVLPS 420
CK D LL Y EN Y+A H + C CKKVL S
Sbjct: 146 CKQHVDNSDLLTYQENPYHAYH-FKCTTCKKVLES 179
>AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = -3
Query: 530 CSIPGCKHIADTLLDYENHYNATH---RYSCAQCKKVLPSPHFLDLH--IQENHDSY 375
C + GC + H+ TH R++C +CK H L LH I N D+Y
Sbjct: 361 CPMDGCNKVFKEKGSVHRHF-VTHIGMRFNCDKCKASYTQKHALMLHQKIHANPDAY 416
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/91 (16%), Positives = 40/91 (43%)
Frame = -3
Query: 329 EECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQ 150
E KQ+ + + + ++ ++ R +++KK+K ++ ++ D+ K K K+
Sbjct: 102 EREKQRIERERILEEKRLEKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKK 161
Query: 149 KTFSKNKYAGKKFTSDKKSRDETNMDCSMED 57
K + K + + +K +E + +
Sbjct: 162 KKDEEEKMKKDEERNKRKKEEEEKKEAKRRE 192
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 551 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
TQ QTP + P C + + + +H N + C+ C + L H++E+H
Sbjct: 306 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 362
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 551 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
TQ QTP + P C + + + +H N + C+ C + L H++E+H
Sbjct: 328 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 392 ENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREH 267
EN ++ +KP Y C +C++ F+N +DR H R H
Sbjct: 291 ENLKTHRRTHTGEKP-YKCEFADCEKAFSNASDRAKHQNRTH 331
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 392 ENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREH 267
EN ++ +KP Y C +C++ F+N +DR H R H
Sbjct: 290 ENLKTHRRTHTGEKP-YKCEFADCEKAFSNASDRAKHQNRTH 330
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 551 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
TQ QTP + P C + + + +H N + C+ C + L H++E+H
Sbjct: 328 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = -3
Query: 521 PGCKHIADTLLDYENHYNATHRYSCA------QCKKVLPS-PHFLDLH-----IQENHD- 381
PG +HI + + ++Y+ HR + CK V+PS P + DL + D
Sbjct: 456 PGLEHIPYKIGPFADYYDNVHRIILSHTKDLDHCKIVIPSFPDYYDLSTRYEVLHRVEDI 515
Query: 380 SYFAVMAEKKPSYCCYIEECKQKFNNTADRLD 285
+ ++ E+ P+YC Y E+ K + + LD
Sbjct: 516 LHEPIVIEEYPAYCPY-EDTKYEVQEKSVTLD 546
>Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical
protein F34D10.5 protein.
Length = 280
Score = 28.7 bits (61), Expect = 4.6
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = -3
Query: 554 NTQFKQTPCSIPGCKHIADTLLDYENH---YNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
++ K+ C+ G K DT D + H + Y C QC+K L+ H+++ H
Sbjct: 155 HSDLKRYLCTFCG-KGFNDTF-DLKRHTRTHTGVRPYKCEQCEKSFTQRCSLESHLRKVH 212
Query: 383 DSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDF-RF-ERQKKDKNKMP 210
+++ S E+C L H H + RF + QKK+ + P
Sbjct: 213 GVTHQYAYKERRSKVFVCEDCGYTDEKFEVYLSHIKVVHPFSAAYLRFTQLQKKNSSMKP 272
Query: 209 NAM 201
+
Sbjct: 273 EQL 275
>Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical
protein C07A9.11 protein.
Length = 672
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 96 FLVACEFLSCIFIFAKRLLFAIVQMEFIGLSLVYVHSV 209
+LVA FL+ F+F R+ + + F+GL L+YV +V
Sbjct: 202 YLVALSFLAFCFVFYNRVTL-WMPLTFLGLYLLYVITV 238
>AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc
finger transcriptionfactor protein.
Length = 280
Score = 28.7 bits (61), Expect = 4.6
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = -3
Query: 554 NTQFKQTPCSIPGCKHIADTLLDYENH---YNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
++ K+ C+ G K DT D + H + Y C QC+K L+ H+++ H
Sbjct: 155 HSDLKRYLCTFCG-KGFNDTF-DLKRHTRTHTGVRPYKCEQCEKSFTQRCSLESHLRKVH 212
Query: 383 DSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDF-RF-ERQKKDKNKMP 210
+++ S E+C L H H + RF + QKK+ + P
Sbjct: 213 GVTHQYAYKERRSKVFVCEDCGYTDEKFEVYLSHIKVVHPFSAAYLRFTQLQKKNSSMKP 272
Query: 209 NAM 201
+
Sbjct: 273 EQL 275
>AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine
receptor, class x protein101 protein.
Length = 318
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 169 WNLLDLASSTSIALGILFLSFFCLSKRKSLGILCSRTQWSNLSAVLLNFCLHSS 330
W +L +AS +++ L F K S ILCS SN+ +LL + +H++
Sbjct: 32 WIML-MASLLGMSVNCCVLRNFYKQKMSSFDILCSSKTLSNM-CILLGYVIHNA 83
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 QKKDKNKMPN--AMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDCSM 63
++K+ K P+ A K K N +K SK+K KK + DKKS D D
Sbjct: 79 EEKEVEKKPDEPAKSKKSEKKEKSK-NEGSKKEESKDKEKSKK-SEDKKSEDPKKEDAKK 136
Query: 62 EDLK 51
D+K
Sbjct: 137 PDVK 140
>U61949-4|AAB03150.2| 414|Caenorhabditis elegans Hypothetical
protein F49E8.2 protein.
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 578 YDVDDG-NYNTQF-KQTPCSIPGCKHIADTLLDYEN-HYNATHRYSCAQCKKVLPSPHFL 408
++V+ G N NT+ KQT +H+ D + E + + RY C C + LP
Sbjct: 211 HEVETGRNRNTKIRKQT-------EHVLDAHPESEFLNVDIAKRYECVHCLRTLPVSKSP 263
Query: 407 DLHIQENHD 381
HI E+HD
Sbjct: 264 CEHISEHHD 272
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 479 NHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 384
+H A+H+ C QC P F+ H ++NH
Sbjct: 130 HHSKASHK--CPQCSYTNEKPAFIRRHFEQNH 159
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 230 KDKNKMPNAMDVDE--AKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKS 93
K K + P D E AK NK S + K++ AGK T+ KKS
Sbjct: 688 KAKREKPEVADSSEKAAKKNKSSKKKSVKNQNRKSQEAGKNGTASKKS 735
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 230 KDKNKMPNAMDVDE--AKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKS 93
K K + P D E AK NK S + K++ AGK T+ KKS
Sbjct: 688 KAKREKPEVADSSEKAAKKNKSSKKKSVKNQNRKSQEAGKNGTASKKS 735
>AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical
protein Y59C2A.3 protein.
Length = 759
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 188 AKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDCSMEDLKDSLPK 36
A +++H + ++K + KK+ D KSR E N++ E +KD+ K
Sbjct: 620 AARDRYHKMSEEEKRLHNQRRRYKKYGFDPKSR-EINLEDVREQMKDANAK 669
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -3
Query: 236 QKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDETNMDCSMED 57
+KKD++K D DE K + + +K K +K KKS S +
Sbjct: 109 EKKDEDKKDEKKDADEKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKRE 168
Query: 56 LKD 48
KD
Sbjct: 169 KKD 171
>AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical
protein C52E2.8 protein.
Length = 649
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 191 EAKSNKFHLNNSKQKTFSKNK-YAGKKFTSDKKSRDETNMDCSMEDLKDSL 42
E + + F +N K +K K YA K++SD E+ D S+ LKDS+
Sbjct: 161 ETRLDVFEASNKKPCYGNKKKRYAETKYSSDDSDAMESYSDGSVVVLKDSV 211
>Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical
protein R08H2.2 protein.
Length = 339
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 57 ILHRTVHICFIPRFLVACEFLSCIFIFAKRLLFAIVQMEFIGLSLVYV 200
IL VH FI R++V C+F F L+F ++ G SL Y+
Sbjct: 105 ILILVVH--FIYRYVVVCDFHKLRFFNGPYLMFWVIGAAVSGFSLGYL 150
>Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical
protein K08E3.2 protein.
Length = 276
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Frame = -3
Query: 443 QCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCC--YIEECKQKFNNTADRLDHCVRE 270
QC +P + ++++ +S A K P+ E + ++ + E
Sbjct: 20 QCTSKKAAPSVAPIKMEKHAESLTATPVSKSPAPVSKSLALEKDEDVEKKKEKGEEKEEE 79
Query: 269 HRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSR 90
+ K + +KKD +K + E K N+++K +KNK ++ K +
Sbjct: 80 EKGEKKKEDKEEKKDDSKEDKKDEDHEKKKTAEEKENNEKKDENKNKNKDERKDEKKDEK 139
Query: 89 DETNMDCSMEDLKD 48
+ D ++ K+
Sbjct: 140 KDDEKDERNDEKKE 153
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -3
Query: 542 KQTPCSIPGCKHI---ADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQEN 387
K PC PGC +D L + + ++C +C + L LH++ +
Sbjct: 281 KPYPCEWPGCSWRFARSDELTRHYRKHTGAKPFACKECSRKFSRSDHLQLHMKRH 335
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 212 PNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDET 81
PNA+ K N F+ N SK S++KY K+F + D T
Sbjct: 324 PNALHYMATKLNHFYANRSKSA--SEHKYNWKRFLEENDFIDLT 365
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = -3
Query: 326 ECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQK 147
E ++K A R+ E R K+ R E +KK K + + E K + L K+K
Sbjct: 170 EIEEKAEMDAKRVAEEEEERRKEKEKRREEKKKQKELLKEK-ERSERKEKERELEREKEK 228
Query: 146 TFSKNKYAGKKFTSDKKSRDE 84
+ K + ++ +K+ E
Sbjct: 229 SREKEREKEREKEREKEREKE 249
>Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical
protein ZK1251.8 protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 290 LDHCVREHR--IPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNS 156
+D C E IP+ + + +KK KNK +DE + K+ + NS
Sbjct: 120 IDRCYAEANVPIPEGYGGQPRKKIKNKEEEKDVIDETPAEKWSIGNS 166
>U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 15 protein.
Length = 337
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 177 IGLSLVYVHSVRHFVFILFLSFKTKIFGYPVL 272
IGLS+ Y+H++ H ++ LF+SF +F Y +L
Sbjct: 96 IGLSM-YIHTLTHSLWSLFISF---VFRYLIL 123
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 263 IPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQK 147
+P++ R+ R++ D + P DEA+SN H +Q+
Sbjct: 150 LPRERRYARRELDGIENPEFSTDDEARSNNRHRRGRRQQ 188
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 548 QFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHD 381
+ Q+ + + + D+LL + A ++C C K P+ L +H + HD
Sbjct: 118 RMSQSQWKVEQKQQLEDSLL---KPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHD 170
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 147 LLFAIVQMEFIGLSLVYVHSVRHFVFILFLS 239
L+ A V + + SL+ ++S HF+F +FLS
Sbjct: 124 LIIASVDVIIVFASLLTINSTCHFIFCIFLS 154
>AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine
receptor, class v protein13 protein.
Length = 350
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 487 SNSVSAMCLHPGMLHGVCLNWVL*FPSSTS*IPS-LVGCLSCINRTSSSIRFPTPYSLSF 663
+N +SAM L PG H + + L S +P LVG L+ N+T +I F
Sbjct: 114 TNRLSAMLL-PGSYHKMWKSKRLWIAISVQFLPGMLVGLLTFFNKTQLAINEKNGLVPVF 172
Query: 664 SNRDFAFIFFGCQPFWNQLNF 726
++ IFF F+ N+
Sbjct: 173 LDKQMTTIFFSIGGFFLFANY 193
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 380 NRGSPVCAGLRNAAKAEPSCIERTSTCASRCNGFRNLT 493
N G+ C G R E +ER +T A R N F +T
Sbjct: 21 NAGTCQCRGFRPVLNHEDETVERRATRAERENDFAPMT 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,189
Number of Sequences: 27780
Number of extensions: 438041
Number of successful extensions: 1678
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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