Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b13
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +1

Query: 649 NITIFFVLF*FHYSFIKIHLLS*QTEIL*VQLLVYKNYFILK----HEIYLFS*LNFILA 816
           N+ + ++ F F++SF  + L++    ++ + LL+Y  ++ LK    HE Y     N+ LA
Sbjct: 186 NLVVAYLFFLFYFSFFYMILITAAPNLVAITLLLYSRHYNLKITRIHEDYAHQ-SNYTLA 244


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 548 ICRNHHCKLSSFFCHIFLYS*YNVTSLSSAINFR 447
           +C + HC+    F HI+  S  ++++ SS +N R
Sbjct: 26  LCFHQHCRSRFSFLHIYFVSSLHISTYSSFLNKR 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,384
Number of Sequences: 27780
Number of extensions: 275214
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)