Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b11
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   0.79 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   3.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    23   4.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    23   7.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    22   9.7  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    22   9.7  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 173 AEVAETSHARMAPPVKTTAT-AMPTAPIVHQRQETAAN 63
           A      H    PPV+++ + +MP AP+ H    T  N
Sbjct: 735 APTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMN 772


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = -2

Query: 179 CRAEVAETSHARMAPPVKTTATAMP-TAPIVHQRQETAANGHLKETFENDPFCF 21
           CR E   ++H R  PP   T    P T P  H       + H        P+CF
Sbjct: 147 CRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHH-----PPHPHFHNNNYPPPYCF 195


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 86  QRQETAANGHLKETFENDP 30
           +++E A    +KETF++DP
Sbjct: 177 RKEEEAREKRMKETFKDDP 195


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 90  DNRSSWHRSCSRL 128
           D+++ WHR C+R+
Sbjct: 41  DDKTIWHRFCARV 53


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 164 AETSHARMAPPVKTTATAMPTAPIVHQRQE 75
           + T  +  APPV T A ++PT+    Q+ E
Sbjct: 64  SNTPKSFAAPPVPTGAPSLPTSSNNTQQAE 93


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 189 PLTMPCGGCGDESC 148
           P+T+PCGG     C
Sbjct: 29  PVTLPCGGTVCRKC 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,011
Number of Sequences: 5004
Number of extensions: 8555
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)