Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b11
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical ...    35   0.007
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    29   0.45 
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      29   0.45 
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    28   1.0  
AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical ...    25   7.4  
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical
           protein F40H3.1a protein.
          Length = 496

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -2

Query: 182 QCRAEVAETSHARMAPPVKTTATAMPTAP--IVHQRQETAANGHL-KETFENDPFCF 21
           +C+A + +T++    PPV  T +A    P  IV +++ T+A   +  E  +N+P CF
Sbjct: 190 RCKAILPDTTYICTLPPVSATFSAPVVTPKKIVKRKKSTSAAAKMAAEVLQNEPHCF 246


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 173 AEVAETSHARMAPPVKTTATAMPTAPIVHQRQETAANGHLKETFENDPF 27
           A  +  +H +  P    +A A P A    Q  +  ++GH    F  DPF
Sbjct: 640 AGTSSQNHVQQPPDPFASARANPAADPFAQVDQFGSSGHFDAAFPTDPF 688


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 173 AEVAETSHARMAPPVKTTATAMPTAPIVHQRQETAANGHLKETFENDPF 27
           A  +  +H +  P    +A A P A    Q  +  ++GH    F  DPF
Sbjct: 685 AGTSSQNHVQQPPDPFASARANPAADPFAQVDQFGSSGHFDAAFPTDPF 733


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 182 QCRAEVAETSHARMAPPVKTTATAMPTAPIVHQRQETAANGHLKETFEND 33
           +CR  VA+  H+RM   ++  A ++    I+    E     HLK  F+ +
Sbjct: 52  KCREIVADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDRE 101


>AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical
           protein Y60C6A.1 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 107 PTAPIVHQRQETAANGHLKETFENDPFC 24
           P+ PI   R E   +GH +ETFEN   C
Sbjct: 41  PSVPIRVGRIEFYWDGHFQETFENPVQC 68


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 173 AEVAETSHARMAPPVKTTATAMPTA-PIVHQRQETAANGHLKETFEN 36
           A  AE+   +      TT T  PT  P+  ++ + + +   KE+FEN
Sbjct: 61  ASGAESGPKKTTSKPATTPTPEPTTTPVEEEKVKVSPSSSTKESFEN 107


>AF039041-2|AAP46270.1|  587|Caenorhabditis elegans Hypothetical
           protein W03F8.10 protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 174 CGGCGDESCKDGA 136
           CG CG +SC +GA
Sbjct: 225 CGFCGGQSCMEGA 237


>AC024751-5|AAK21514.2|  220|Caenorhabditis elegans Hypothetical
           protein Y18H1A.4 protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 195 FKPLTMPCGGCGDESC 148
           F   T+P  GCGD++C
Sbjct: 127 FSKYTLPREGCGDDAC 142


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 158 TSHARMAPPVKTTATAMPTAPIVHQRQ 78
           +  A + PP  T  TA+P AP   ++Q
Sbjct: 387 SERAPLLPPPATPITALPLAPAKEEQQ 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,113,478
Number of Sequences: 27780
Number of extensions: 52689
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)