Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b11
         (201 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   3.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   4.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   5.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   5.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              19   7.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   7.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   7.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    18   9.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            18   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 152 HARMAPPVKTTATAMPTA 99
           HA+M  P  TTAT   T+
Sbjct: 217 HAQMGRPSYTTATMATTS 234


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 126 LYRWRHPCMTRLRNLRTALL 185
           ++ W HP +  LRN    L+
Sbjct: 539 IHTWIHPWLPLLRNRLDTLI 558


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 179 CRAEVAETSHARMAPPVK 126
           C   +   SHA +  PVK
Sbjct: 168 CSTPIGNLSHALLKDPVK 185


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 179 CRAEVAETSHARMAPPVK 126
           C   +   SHA +  PVK
Sbjct: 221 CSTPIGNLSHALLKDPVK 238


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 89 HQRQETAANGHLKETFENDPF 27
          H  Q   +   LK+  ENDPF
Sbjct: 4  HLTQRINSCDLLKKRSENDPF 24


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 89 HQRQETAANGHLKETFENDPF 27
          H  Q   +   LK+  ENDPF
Sbjct: 4  HLTQRINSCDLLKKRNENDPF 24


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +2

Query: 14 VLKNKTGRF 40
          +LKN+TGR+
Sbjct: 38 LLKNRTGRY 46


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 89  HQRQETAANGHLKETFENDPF 27
           H  Q   +   LK+  ENDPF
Sbjct: 125 HLTQRINSCDLLKKRNENDPF 145


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 176 RAEVAETSHARMAPPVKTTATAMP 105
           RAE  +T  A+M P     A   P
Sbjct: 540 RAENHQTGTAKMGPSYDPMAVVSP 563


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 174 CGGCGD 157
           CG CGD
Sbjct: 78  CGACGD 83


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 63 WTSKGNI*KRPVLFLRT 13
          W S+G +  +PV F  T
Sbjct: 29 WKSRGVVGPKPVPFFGT 45


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 87  VDNRSSWHRSCSRLYRWRH 143
           V+N S   +S ++   WRH
Sbjct: 385 VENNSEVSKSRTKESAWRH 403


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 101 APIVHQRQETAANGHLKETFEND 33
           A I++Q  + + +    +TF+ND
Sbjct: 213 ALIIYQNSDDSFHRLTSKTFDND 235


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -1

Query: 192 KPLTMPCGGC 163
           K L  PC GC
Sbjct: 14  KSLKEPCDGC 23


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +3

Query: 87  VDNRSSWHRSCSRLYRW 137
           +D R  W R     Y+W
Sbjct: 71  IDKRPWWERYQPISYKW 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,798
Number of Sequences: 438
Number of extensions: 623
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)