Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b09
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    35   0.059
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    35   0.059
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    34   0.10 
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    29   5.1  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    29   5.1  
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -2

Query: 803 VLRGTGGAFVLVLYDEIKKVL 741
           V RGTGGA VL +YDEI+K L
Sbjct: 280 VFRGTGGALVLAIYDEIQKFL 300


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -2

Query: 803 VLRGTGGAFVLVLYDEIKKVL 741
           V RGTGGA VL +YDEI+K L
Sbjct: 280 VFRGTGGALVLAIYDEIQKFL 300


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 803 VLRGTGGAFVLVLYDEIKKVL 741
           V RGTGGA VL +YDEI+K +
Sbjct: 293 VFRGTGGALVLAIYDEIQKFI 313


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 803 VLRGTGGAFVLVLYDEIKKVL 741
           V RGTGGA VL +YDEI+K +
Sbjct: 293 VFRGTGGALVLAIYDEIQKFI 313


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 803 VLRGTGGAFVLVLYDEIKKVL 741
           V R TGGA VL +YDEI+ ++
Sbjct: 280 VFRATGGALVLTIYDEIQHLI 300


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 481 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 603
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 481 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 603
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 481 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 603
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 481 FSF*MKKRLYNMKAIEMSKLEKFTSVRTSNYVTLNKTINYG 603
           FS   KKRL   + I  S LE FTS R +N   + K I +G
Sbjct: 574 FSNDEKKRLLRNRTISRSSLEGFTS-RFANEFEVKKVIGHG 613


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 800 LRGTGGAFVLVLYDEIKKVL 741
           +RGTG A VL +Y+E++K +
Sbjct: 287 IRGTGAALVLAIYNELQKYM 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,219
Number of Sequences: 27780
Number of extensions: 334550
Number of successful extensions: 532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)