Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b08
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 392 ANSFLFINHVFVVE*AACDFPFVVNSPV 309
           A S    +++FVV  A CDF  ++ +P+
Sbjct: 76  AKSLRTPSNMFVVNLAICDFFMMIKTPI 103


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +1

Query: 538 YTVYDPHGA---RAYVLLFFFWQVNNCS 612
           Y VY   G+      V+LFF+W++ N +
Sbjct: 247 YVVYSALGSFYIPMLVMLFFYWRIYNAA 274


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 115 VIRAIDLVCNLFVLSTVKNITRTG 44
           ++  I ++C L + +++KN  R G
Sbjct: 206 IVELIGIICALCLANSIKNAERRG 229


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 306 VSGGDPEMAPVVTAI*RCSA 247
           + G D E+A V+ A+ RC+A
Sbjct: 347 IFGSDQEVAGVMRAVKRCNA 366


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IARITFYFPNIIFFNFLSIH 161
           IARITF     +F  F  IH
Sbjct: 465 IARITFPVAYFMFLTFFFIH 484


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IARITFYFPNIIFFNFLSIH 161
           IARITF     +F  F  IH
Sbjct: 451 IARITFPVAYFMFLTFFFIH 470


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IARITFYFPNIIFFNFLSIH 161
           IARITF     +F  F  IH
Sbjct: 485 IARITFPVAYFMFLTFFFIH 504


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IARITFYFPNIIFFNFLSIH 161
           IARITF     +F  F  IH
Sbjct: 434 IARITFPVAYFMFLTFFFIH 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,120
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)