Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b06
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...   195   7e-51
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...   134   2e-32
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...   124   1e-29
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    32   0.11 
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    29   1.0  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.5  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 785

 Score =  195 bits (475), Expect = 7e-51
 Identities = 109/240 (45%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
 Frame = -3

Query: 783  KCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHI 604
            KCN P       + F  FYL+KH+GR+L   P +GSAD+   F             R++ 
Sbjct: 559  KCNFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNF-----------KDRKYD 607

Query: 603  IQVSTFQMCVLLLFN---QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHP 433
            + VST    +LLLF    +   L +EE+L +T+I   DL R LQSLA  K   +IL+K P
Sbjct: 608  LNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAK--YKILLKDP 665

Query: 432  KTKEIEPSHQFYVNDAFTSKLHRVKIQTVA-AKGESEPERRETRNKVDEDRKHEIEAAIV 256
            K +E+    +FY N+ F S L R+KI TVA  + E + ER+ T  KVDE RKH+ +A IV
Sbjct: 666  KGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIV 725

Query: 255  RIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
            R+MK RK   H  L+AEVT QL  RF PSP++IK+RIE LIEREYL R  D+ ++Y Y+A
Sbjct: 726  RVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 734

 Score =  134 bits (323), Expect = 2e-32
 Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 3/235 (1%)
 Frame = -3

Query: 774  IPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQV 595
            +P   +   + F  FYL+K  G+++S    LG   + A F                 + +
Sbjct: 515  LPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKE-----------LSI 563

Query: 594  STFQMCVLLLFNQ---RDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTK 424
            S FQ CVLL FN     + ++Y++L   T++ + DL R LQSL+  +   R L+  PK+K
Sbjct: 564  SLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARI--RPLVMVPKSK 621

Query: 423  EIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMK 244
            +  P   FYVN+ FT KL+RVKI  +  K E + E  + + +V  DR+ E++A+IVR+MK
Sbjct: 622  KPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQ-ENSDVQEQVVRDRQFELQASIVRVMK 680

Query: 243  ARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYV 79
             ++KM H  LV  V   ++ R +P    +K  IE L+E+EYL R  +D  +Y YV
Sbjct: 681  QKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLER--EDNDIYTYV 733


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 767

 Score =  124 bits (299), Expect = 1e-29
 Identities = 77/221 (34%), Positives = 118/221 (53%)
 Frame = -3

Query: 750  FEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVL 571
            +E F+++Y + H+GR+LS    L   ++ A                 ++ QVST+QM VL
Sbjct: 558  YEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVT--------YVFQVSTYQMGVL 609

Query: 570  LLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVN 391
            LL+N RD  TYEEL   T +    L   L      K    +L+     K  +P+  + +N
Sbjct: 610  LLYNHRDSYTYEELAKITGLSTDFLTGILNIFLKAK----VLLLGDNDKLGDPNSTYKIN 665

Query: 390  DAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLV 211
            + F  K  RV++  +  + E + E  ET   ++EDRK  +++AIVRIMKAR+ + H +LV
Sbjct: 666  ENFRMKKIRVQLN-LPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLV 724

Query: 210  AEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVY 88
             E  +Q++ RF P    IK+ I+ LIE+EYL R   D  +Y
Sbjct: 725  KETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
 Frame = -3

Query: 534 ELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKT-----KEIEPSHQFYVNDAFTSKL 370
           ELL+E  I  K+   + +++   K  +R  +KH +      ++++ +  +   D+F S+L
Sbjct: 117 ELLDE--ILPKEPAGSKEAMQQKKKEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRL 174

Query: 369 HRVKIQTVAAKGESEPER----RETRNKVDEDRKHEIE 268
            + K ++     + E ER    +E RNK++E  K E+E
Sbjct: 175 KQKKQRSEFRASKREMERLERDQELRNKIEERNKKELE 212


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 504 KDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQTV 346
           +DL+  L+S+   + T+  L KH   K+  P+ + +     +S L+R+ I  +
Sbjct: 8   QDLIWILKSVQSRRSTKGFLQKHSSLKDGSPNKKSFAQPISSSFLNRISITKI 60


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/58 (20%), Positives = 26/58 (44%)
 Frame = -3

Query: 420 IEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIM 247
           +EP+H     D     +   K      + E EP         D+D+KH++++  ++++
Sbjct: 69  LEPTHLINDIDDDNEIIEEKKETEKVEESELEPRYTRVFRDEDDDQKHQLDSEAIKLL 126


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 355 TNGSREGRVGAGTARDPQQGGRGPQARDRSGHR 257
           T GSR GR G+   R    GGRG     R G R
Sbjct: 4   TPGSRGGRGGSRGGRGGFNGGRGGFGGGRGGAR 36


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = -3

Query: 522 ETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYV-NDAFTSKLHRVKIQTV 346
           E   P  D +    S A+ K  ++   K+ K K  + + +    NDA +  +    IQ V
Sbjct: 198 EVSRPSTDTIGV--SSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKV 255

Query: 345 AAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAH 223
           A   + + E+    +  +E+R+      ++    A++ M H
Sbjct: 256 AQSEDVDAEQDTVADSKEEERRDIANDDLIVNANAKEPMHH 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,087
Number of Sequences: 5004
Number of extensions: 40780
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)