Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b06
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 235 3e-62
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 227 9e-60
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 131 7e-31
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 131 7e-31
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 115 5e-26
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 113 1e-25
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 113 1e-25
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 106 2e-23
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 102 3e-22
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 100 1e-21
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 79 5e-15
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 31 1.3
Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical p... 30 1.7
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 29 2.9
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 29 2.9
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 29 2.9
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 29 2.9
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 29 2.9
AF047661-3|AAC04436.1| 198|Caenorhabditis elegans Hypothetical ... 29 3.9
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 29 5.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 28 6.8
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 28 6.8
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 6.8
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 28 9.0
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 28 9.0
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 28 9.0
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 28 9.0
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 28 9.0
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 28 9.0
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 28 9.0
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 28 9.0
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 28 9.0
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 235 bits (575), Expect = 3e-62
Identities = 130/258 (50%), Positives = 172/258 (66%), Gaps = 20/258 (7%)
Frame = -3
Query: 789 TPKCNIPAAPRN---AFEVFRSFYLAKHSGRQLSLQPQLGSADLHATF------------ 655
T +CN P+ A+E+F +Y KH+GR+L++ LG+AD+ ATF
Sbjct: 520 TVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEE 579
Query: 654 ---GXXXXXXXXXXXPRRH-IIQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRA 487
G H I+QV+T QM +LL FN +R++ ++L++E IPE++L R
Sbjct: 580 NGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRN 639
Query: 486 LQSLAMGKPTQRILIKHPKTKE-IEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRE 310
LQSLA+GK +QRIL++ K K+ I+ S +F VND F SKL RVK+Q V K ESEPE RE
Sbjct: 640 LQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRE 699
Query: 309 TRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIE 130
TR KV++DRK E+EAAIVRIMKARKK+ H LVAEVT+QLR RF+PSP++IK+RIE LIE
Sbjct: 700 TRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIE 759
Query: 129 REYLARTPDDRKVYNYVA 76
REYLAR D + Y Y+A
Sbjct: 760 REYLARDEHDHRAYQYIA 777
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 227 bits (554), Expect = 9e-60
Identities = 129/261 (49%), Positives = 171/261 (65%), Gaps = 23/261 (8%)
Frame = -3
Query: 789 TPKCNIPAAPRN---AFEVFRSFYLAKHSGRQLSLQPQLGSADLHATF------------ 655
T +CN P+ A+E+F +Y KH+GR+L++ LG+AD+ ATF
Sbjct: 520 TVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEE 579
Query: 654 ---GXXXXXXXXXXXPRRH-IIQVSTFQMCVLLLFNQRDRLTYE---ELLNETDIPEKDL 496
G H I+QV+T QM +LL N +R++ + +L++E IPE++L
Sbjct: 580 NGPGPSGSGESMKERKPEHKILQVNTHQMIILLQLNHHNRISCQHEQQLMDELKIPEREL 639
Query: 495 VRALQSLAMGKPTQRILIKHPKTKE-IEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPE 319
R LQSLA+GK +QRIL++ K K+ I+ S +F VND F SKL RVK+Q V K ESEPE
Sbjct: 640 KRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPE 699
Query: 318 RRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEG 139
RETR KV++DRK E+EAAIVRIMKARKK+ H LVAEVT+QLR RF+PSP++IK+RIE
Sbjct: 700 IRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIET 759
Query: 138 LIEREYLARTPDDRKVYNYVA 76
LIEREYLAR D + Y Y+A
Sbjct: 760 LIEREYLARDEHDHRAYQYIA 780
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 131 bits (316), Expect = 7e-31
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 8/246 (3%)
Frame = -3
Query: 789 TPKCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRR 610
T + NIP R+ ++ FY +H R + L SA + A+F ++
Sbjct: 571 TYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHGLASAVISASF---------RPGCKK 621
Query: 609 HIIQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILI---- 442
+I + +Q +LLLFN+ + T E++ T I E ++V+ + +L G+ ++L
Sbjct: 622 ELI-ATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEG 680
Query: 441 ----KHPKTKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHE 274
K T E + +F VN FT K RV+I V K E E +E + +V+ DR+++
Sbjct: 681 GGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTAVE-ETKEVKEEVNSDRQYK 739
Query: 273 IEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRK 94
I+AA+VRIMKARK++ H L+ E+ +QL RF S IKKR+E LIEREY++R P++
Sbjct: 740 IDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEAS 797
Query: 93 VYNYVA 76
YNYVA
Sbjct: 798 SYNYVA 803
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 131 bits (316), Expect = 7e-31
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 8/246 (3%)
Frame = -3
Query: 789 TPKCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRR 610
T + NIP R+ ++ FY +H R + L SA + A+F ++
Sbjct: 608 TYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHGLASAVISASF---------RPGCKK 658
Query: 609 HIIQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILI---- 442
+I + +Q +LLLFN+ + T E++ T I E ++V+ + +L G+ ++L
Sbjct: 659 ELI-ATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEG 717
Query: 441 ----KHPKTKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHE 274
K T E + +F VN FT K RV+I V K E E +E + +V+ DR+++
Sbjct: 718 GGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTAVE-ETKEVKEEVNSDRQYK 776
Query: 273 IEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRK 94
I+AA+VRIMKARK++ H L+ E+ +QL RF S IKKR+E LIEREY++R P++
Sbjct: 777 IDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEAS 834
Query: 93 VYNYVA 76
YNYVA
Sbjct: 835 SYNYVA 840
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical protein
K08E7.7 protein.
Length = 729
Score = 115 bits (276), Expect = 5e-26
Identities = 71/236 (30%), Positives = 119/236 (50%)
Frame = -3
Query: 783 KCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHI 604
K +P + F +FY A H+GR+L+ ++++ ++++
Sbjct: 505 KIILPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNSK-----------AFEKKYV 553
Query: 603 IQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTK 424
V+ Q+C L LFN++D T E++ ++ K + SL ++ K +
Sbjct: 554 FIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKD 613
Query: 423 EIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMK 244
P +N + +K RV + T K ++ E +N V+ DRK+EI+A IVRIMK
Sbjct: 614 GYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMK 673
Query: 243 ARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
RK + HTLL+ E+ QL+ RF P+ +IK IE LIE+ Y+ R+ ++ VY Y+A
Sbjct: 674 TRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical protein
D2045.6 protein.
Length = 780
Score = 113 bits (273), Expect = 1e-25
Identities = 73/238 (30%), Positives = 116/238 (48%)
Frame = -3
Query: 789 TPKCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRR 610
T +P E+F FY K +GR+L+ ++ +T P++
Sbjct: 555 TTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITST-----------AFPKK 603
Query: 609 HIIQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPK 430
++ +T QMC +LLFN++D T E++ T + EK + SL + + K
Sbjct: 604 YVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNL-VLKADTELQK 662
Query: 429 TKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRI 250
E+ + +N A+ +K RV + K ++ + + V+EDRK I A IVRI
Sbjct: 663 EDEVPMTATVSLNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRI 722
Query: 249 MKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
MK RK++ H L+ EV QL RF P +IK+ I LIE+EY+ RT + +Y Y+A
Sbjct: 723 MKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 113 bits (273), Expect = 1e-25
Identities = 73/238 (30%), Positives = 116/238 (48%)
Frame = -3
Query: 789 TPKCNIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRR 610
T +P E+F FY K +GR+L+ ++ +T P++
Sbjct: 555 TTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITST-----------AFPKK 603
Query: 609 HIIQVSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPK 430
++ +T QMC +LLFN++D T E++ T + EK + SL + + K
Sbjct: 604 YVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNL-VLKADTELQK 662
Query: 429 TKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRI 250
E+ + +N A+ +K RV + K ++ + + V+EDRK I A IVRI
Sbjct: 663 EDEVPMTATVSLNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRI 722
Query: 249 MKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
MK RK++ H L+ EV QL RF P +IK+ I LIE+EY+ RT + +Y Y+A
Sbjct: 723 MKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical protein
ZK520.4c protein.
Length = 791
Score = 106 bits (254), Expect = 2e-23
Identities = 66/234 (28%), Positives = 114/234 (48%)
Frame = -3
Query: 777 NIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQ 598
++P + + F FY KH+GR+L+ + D+ T+ ++++ Q
Sbjct: 576 HLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTY-----------LDKQYVAQ 624
Query: 597 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 418
+ +QM LL F +RD + +++ E + L++ ++++ + + + +
Sbjct: 625 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTIL------DVTLLTCDDQNL 678
Query: 417 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 238
+N + TSK + ++Q E E+ N V +DRK+ +E AIVRIMK R
Sbjct: 679 TADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTR 738
Query: 237 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
K + H LV E+ +Q + RF P IKK IE LIE+ Y+ RT D Y Y+A
Sbjct: 739 KVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 791
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical protein
ZK520.4b protein.
Length = 774
Score = 106 bits (254), Expect = 2e-23
Identities = 66/234 (28%), Positives = 114/234 (48%)
Frame = -3
Query: 777 NIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQ 598
++P + + F FY KH+GR+L+ + D+ T+ ++++ Q
Sbjct: 559 HLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTY-----------LDKQYVAQ 607
Query: 597 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 418
+ +QM LL F +RD + +++ E + L++ ++++ + + + +
Sbjct: 608 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTIL------DVTLLTCDDQNL 661
Query: 417 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 238
+N + TSK + ++Q E E+ N V +DRK+ +E AIVRIMK R
Sbjct: 662 TADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTR 721
Query: 237 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
K + H LV E+ +Q + RF P IKK IE LIE+ Y+ RT D Y Y+A
Sbjct: 722 KVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 774
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical protein
ZK520.4a protein.
Length = 850
Score = 106 bits (254), Expect = 2e-23
Identities = 66/234 (28%), Positives = 114/234 (48%)
Frame = -3
Query: 777 NIPAAPRNAFEVFRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQ 598
++P + + F FY KH+GR+L+ + D+ T+ ++++ Q
Sbjct: 635 HLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTY-----------LDKQYVAQ 683
Query: 597 VSTFQMCVLLLFNQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEI 418
+ +QM LL F +RD + +++ E + L++ ++++ + + + +
Sbjct: 684 MYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTIL------DVTLLTCDDQNL 737
Query: 417 EPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKAR 238
+N + TSK + ++Q E E+ N V +DRK+ +E AIVRIMK R
Sbjct: 738 TADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTR 797
Query: 237 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
K + H LV E+ +Q + RF P IKK IE LIE+ Y+ RT D Y Y+A
Sbjct: 798 KVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 850
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 102 bits (245), Expect = 3e-22
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 2/224 (0%)
Frame = -3
Query: 741 FRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLF 562
F FY KH+GR+L+ + D+ T+ ++H+ Q+ +QM LL F
Sbjct: 538 FEKFYTGKHNGRKLTWLFNMSQGDVRLTY-----------LDKQHVAQMYVYQMAALLCF 586
Query: 561 NQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAF 382
+RD + +++ E + L++ ++++ + + + + +N +
Sbjct: 587 ERRDAILVKDIGEEIGVSGDYLLKTIRTIL------DVTLLTCDDQNLTADSLVRLNMSM 640
Query: 381 TSKLHRVKIQTVAAKGESEPERRETRN--KVDEDRKHEIEAAIVRIMKARKKMAHTLLVA 208
TSK + ++Q E E+ N +V +DRK+ +E AIVRIMK RK + H LV
Sbjct: 641 TSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVT 700
Query: 207 EVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
E+ +Q + RF P IKK IE LIE+ Y+ RT D Y Y+A
Sbjct: 701 EIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 743
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical protein
ZK520.4d protein.
Length = 743
Score = 100 bits (239), Expect = 1e-21
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 2/224 (0%)
Frame = -3
Query: 741 FRSFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLF 562
F FY KH+GR+L+ + D+ T+ ++++ Q+ +QM LL F
Sbjct: 538 FEKFYTGKHNGRKLTWLFNMSQGDVRLTY-----------LDKQYVAQMYVYQMAALLCF 586
Query: 561 NQRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAF 382
+RD + +++ E + L++ ++++ + + + + +N +
Sbjct: 587 ERRDAILVKDIGEEIGVSGDYLLKTIRTIL------DVTLLTCDDQNLTADSLVRLNMSM 640
Query: 381 TSKLHRVKIQTVAAKGESEPERRETRN--KVDEDRKHEIEAAIVRIMKARKKMAHTLLVA 208
TSK + ++Q E E+ N +V +DRK+ +E AIVRIMK RK + H LV
Sbjct: 641 TSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVT 700
Query: 207 EVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
E+ +Q + RF P IKK IE LIE+ Y+ RT D Y Y+A
Sbjct: 701 EIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 743
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical protein
ZK856.1 protein.
Length = 765
Score = 78.6 bits (185), Expect = 5e-15
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 14/234 (5%)
Frame = -3
Query: 735 SFYLAKHSGRQLSLQPQLGSADLHATFGXXXXXXXXXXXPRRHIIQVSTFQMCVLLLFNQ 556
+FY +H+GR+L S + FG R ++ +TFQM VL FN
Sbjct: 542 AFYKKQHNGRKLCWMHHWSSGTM--VFGTANGG--------RFDLECTTFQMAVLFCFND 591
Query: 555 R--DRLTYEELLNETDIPEKDLVRALQSL-AMGKPTQRILIKH-PKT----KEIEPSHQF 400
R D+++ E L T++P+ +L R L SL A K +IL+ P T ++ S +F
Sbjct: 592 RAHDKISLETLRLATELPDAELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKF 651
Query: 399 YVNDAFT-----SKLHRVKIQTVAAKGES-EPERRETRNKVDEDRKHEIEAAIVRIMKAR 238
+N F R K+ + S E + + R+ ++ IV+I+K R
Sbjct: 652 LINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKEHESIVALRELRVQEGIVKILKTR 711
Query: 237 KKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKVYNYVA 76
K L E+ E L+ F+P+ +IK++I+ LIE +Y+ R DD + Y++
Sbjct: 712 KTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRADDINTFVYIS 765
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 30.7 bits (66), Expect = 1.3
Identities = 31/162 (19%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Frame = -3
Query: 558 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVN---- 391
+++R E LL + + E++ +R L + + + + + K ++ H+ +
Sbjct: 90 EKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQKALQNDHENSIQLQLL 149
Query: 390 -DAFTSKLHRVKIQTVAAKGESEPERRETRNK-VDEDRKHEIEAAIVRIMKARKKMAHTL 217
D + ++ + + K E E +E N+ ++ R+HEIE ++ RK+ H
Sbjct: 150 KDGGQKERQEIEDRRIKEKNEHEKRIKEQDNQFIENQRQHEIEENERKMEFERKQAEHEE 209
Query: 216 LVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKV 91
+ ++ E+ R ++++++ E E E L R +D ++
Sbjct: 210 KLQQIREKERKL---QELLLRQKEEA--EEEALRRLANDSEI 246
>Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical
protein F59B2.11 protein.
Length = 590
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 358 DTNGSREGRVGAGTARDPQQGGRGPQARDRSGHRAHHESQEEN 230
+++G R GR G G PQ G + +RSG R +Q E+
Sbjct: 110 ESSGGRGGRGGRGRRPRPQNSESGEDSDNRSGGRRGQSNQYED 152
>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical protein
C54D10.7 protein.
Length = 1144
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Frame = -3
Query: 558 QRDRLTYEELLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVN---- 391
+++R E LL + + E++ +R L + + + + + K ++ H+ +
Sbjct: 795 EKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQKALQNDHENSIQLQLL 854
Query: 390 -DAFTSKLHRVKIQTVAAKGESEPERRETRNK-VDEDRKHEIEAAIVRIMKARKKMAHTL 217
D + ++ + + K E E +E N+ ++ R+HEIE ++ RK+ H
Sbjct: 855 KDGGQKERQEIEDRRIKEKNEHEKRIKEQDNQFIENQRQHEIEENERKMEFERKQTEHEE 914
Query: 216 LVAEVTEQ 193
+ ++ EQ
Sbjct: 915 KLQQMYEQ 922
>Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical
protein W04G3.4 protein.
Length = 588
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 345 AAKGESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRV 184
A + PE ET N + + E +V+I + RKK+ H + + E LR+
Sbjct: 180 ALLSSNRPEDLETANNLIKTLVETEEHKLVKIHERRKKLDHAINLCNQVEHLRL 233
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 480 SLAMGKPTQRILIKHPKTKEIE-PSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETR 304
S G T R + KT +E P + Y + TSKL + + + + ES+PER +
Sbjct: 1344 STPSGGETGRPPVTIEKTIRVEKPGNSDYCSSINTSKLSKSEYKEYKRRCESQPERHDC- 1402
Query: 303 NKVDEDRKHEIE 268
+ VD ++ E E
Sbjct: 1403 DDVDTNKLSEEE 1414
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -3
Query: 327 EPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKR 148
E E RE R + +E R+ E+ A + R + R+++ E R+R L + +R
Sbjct: 496 EDEAREMRRREEERREAELVADVHRQAEERERLRKRQEREEAERLERIR-LEQQKIDMER 554
Query: 147 IEGLIEREYLARTPDDRKVYNYVA*ARTVRD 55
I+ ER R ++R+ + + AR ++
Sbjct: 555 IDA--ERRERERKEEERREFELIEAARRKKE 583
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -3
Query: 327 EPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKR 148
E E RE R + +E R+ E+ A + R + R+++ E R+R L + +R
Sbjct: 496 EDEAREMRRREEERREAELVADVHRQAEERERLRKRQEREEAERLERIR-LEQQKIDMER 554
Query: 147 IEGLIEREYLARTPDDRKVYNYVA*ARTVRD 55
I+ ER R ++R+ + + AR ++
Sbjct: 555 IDA--ERRERERKEEERREFELIEAARRKKE 583
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -3
Query: 327 EPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKR 148
E E RE R + +E R+ E+ A + R + R+++ E R+R L + +R
Sbjct: 496 EDEAREMRRREEERREAELVADVHRQAEERERLRKRQEREEAERLERIR-LEQQKIDMER 554
Query: 147 IEGLIEREYLARTPDDRKVYNYVA*ARTVRD 55
I+ ER R ++R+ + + AR ++
Sbjct: 555 IDA--ERRERERKEEERREFELIEAARRKKE 583
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -3
Query: 327 EPERRETRNKVDEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKR 148
E E RE R + +E R+ E+ A + R + R+++ E R+R L + +R
Sbjct: 496 EDEAREMRRREEERREAELVADVHRQAEERERLRKRQEREEAERLERIR-LEQQKIDMER 554
Query: 147 IEGLIEREYLARTPDDRKVYNYVA*ARTVRD 55
I+ ER R ++R+ + + AR ++
Sbjct: 555 IDA--ERRERERKEEERREFELIEAARRKKE 583
>AF047661-3|AAC04436.1| 198|Caenorhabditis elegans Hypothetical
protein M70.2 protein.
Length = 198
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 507 EKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGES 328
EK + + L Q + + T PS F A SK R+++Q V + +
Sbjct: 131 EKSIKKTNSELKAAADNQTVTQGNDTTTTQGPSSLF---PADLSKKDRLRLQKVKERAVA 187
Query: 327 EPERRETRNK 298
PE+++T+NK
Sbjct: 188 APEKKKTKNK 197
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 28.7 bits (61), Expect = 5.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 662 ACRSALPSCGCRDSCRPEC 718
+C+ P+C C+ +C P C
Sbjct: 156 SCQQTCPTCNCQSACAPAC 174
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 435 PKTKEIEPSHQFYVNDAFTSKLHRVKIQTVAAKGESEPERRETRNK-VDEDRKHEIEAAI 259
P T+E S + + +++LH I A ES E E + K +D K IEA +
Sbjct: 395 PHTRETTSSSNDNSSASDSAELHTQLINGFAQSSESSEESEEKKKKPQQQDDKTTIEAYL 454
Query: 258 VRIMKARKK 232
I++ + K
Sbjct: 455 KTILELQAK 463
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 288 PRPPCCGSRAVPAPTLP 338
P PCCG VPAP P
Sbjct: 95 PASPCCGPSPVPAPCCP 111
>Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical
protein T23F1.7b protein.
Length = 799
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 264 AIVRI--MKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKV 91
AIV + M + KK H L+ + T Q RV PV+IK+ I+ + + L + + +
Sbjct: 509 AIVNLTRMDSDKKTEHANLLYDKTYQNRVEEAGLPVIIKETIKISDDFDALIKLSIPKDI 568
Query: 90 YN 85
YN
Sbjct: 569 YN 570
>Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical
protein T23F1.7a protein.
Length = 779
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 264 AIVRI--MKARKKMAHTLLVAEVTEQLRVRFLPSPVVIKKRIEGLIEREYLARTPDDRKV 91
AIV + M + KK H L+ + T Q RV PV+IK+ I+ + + L + + +
Sbjct: 489 AIVNLTRMDSDKKTEHANLLYDKTYQNRVEEAGLPVIIKETIKISDDFDALIKLSIPKDI 548
Query: 90 YN 85
YN
Sbjct: 549 YN 550
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 28.3 bits (60), Expect = 6.8
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = -3
Query: 531 LLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQ 352
L+ + DIP L L +L P E++ S Q + D +T L R+ ++
Sbjct: 1127 LIRKIDIPSNRLDSILDRFYQLNLCGLVLATCP-LPELKDSMQLPLGD-WT--LIRLLLE 1182
Query: 351 TVAAKGESEPERRETRNKV----DEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLR 187
T+ G S P R + K +ED + EIE A + + K+ A LL + EQ R
Sbjct: 1183 TLKVFGSSPPGLRVDKRKALTLREEDEEEEIEEAAEAALNSEKERA-PLLGSVRAEQRR 1240
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 28.3 bits (60), Expect = 6.8
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = -3
Query: 531 LLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQ 352
L+ + DIP L L +L P E++ S Q + D +T L R+ ++
Sbjct: 1098 LIRKIDIPSNRLDSILDRFYQLNLCGLVLATCP-LPELKDSMQLPLGD-WT--LIRLLLE 1153
Query: 351 TVAAKGESEPERRETRNKV----DEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLR 187
T+ G S P R + K +ED + EIE A + + K+ A LL + EQ R
Sbjct: 1154 TLKVFGSSPPGLRVDKRKALTLREEDEEEEIEEAAEAALNSEKERA-PLLGSVRAEQRR 1211
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 28.3 bits (60), Expect = 6.8
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = -3
Query: 531 LLNETDIPEKDLVRALQSLAMGKPTQRILIKHPKTKEIEPSHQFYVNDAFTSKLHRVKIQ 352
L+ + DIP L L +L P E++ S Q + D +T L R+ ++
Sbjct: 1098 LIRKIDIPSNRLDSILDRFYQLNLCGLVLATCP-LPELKDSMQLPLGD-WT--LIRLLLE 1153
Query: 351 TVAAKGESEPERRETRNKV----DEDRKHEIEAAIVRIMKARKKMAHTLLVAEVTEQLR 187
T+ G S P R + K +ED + EIE A + + K+ A LL + EQ R
Sbjct: 1154 TLKVFGSSPPGLRVDKRKALTLREEDEEEEIEEAAEAALNSEKERA-PLLGSVRAEQRR 1211
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 349 GSREGRVGAGTARDPQQGGRGPQARDRSGHRAHHESQEEN 230
G GR G G R P +G RG ++R RS R S++ +
Sbjct: 86 GGFGGRGGGGRDRSPYRGDRG-RSRSRSRDRGRDRSRDRS 124
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 399 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 458
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 459 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 506
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 399 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 458
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 459 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 506
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
protein F45E10.1e protein.
Length = 1234
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 113 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 172
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 173 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 220
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -3
Query: 483 QSLAMGKPTQRILIKHPKTKEIE------PSHQFYVNDAFTSKLHRVKIQTVAAKGESEP 322
Q L M P Q + + + ++ P Q + N A K V IQ V E
Sbjct: 16 QQLIMRVPKQEVSVSGAARRYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLET 75
Query: 321 ERRETRNKVDEDR 283
+ NKVD+D+
Sbjct: 76 LNKSGNNKVDDDK 88
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -3
Query: 483 QSLAMGKPTQRILIKHPKTKEIE------PSHQFYVNDAFTSKLHRVKIQTVAAKGESEP 322
Q L M P Q + + + ++ P Q + N A K V IQ V E
Sbjct: 16 QQLIMRVPKQEVSVSGAARRYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLET 75
Query: 321 ERRETRNKVDEDR 283
+ NKVD+D+
Sbjct: 76 LNKSGNNKVDDDK 88
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -3
Query: 483 QSLAMGKPTQRILIKHPKTKEIE------PSHQFYVNDAFTSKLHRVKIQTVAAKGESEP 322
Q L M P Q + + + ++ P Q + N A K V IQ V E
Sbjct: 16 QQLIMRVPKQEVSVSGAARRYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLET 75
Query: 321 ERRETRNKVDEDR 283
+ NKVD+D+
Sbjct: 76 LNKSGNNKVDDDK 88
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = -3
Query: 528 LNETDIPEKDLVRALQSLAMGK----PTQRILIKHPKTKEIEPSHQFYVNDAFTSKL--H 367
++ TD+P ++++ L M PT +L+K K S + + A + H
Sbjct: 533 IDTTDVPPLPPLKSVVPLKMTSIRQPPTYDVLLKQGKITSPVKSFGYEQSSASEDSIVAH 592
Query: 366 RVKIQTVAAK--GESEPERRETRNKVDEDRKHEIEAAIVRIMKARKKM 229
T K G ERR +NK E + +A + K R+K+
Sbjct: 593 ASAQVTPPTKTSGNHSLERRMGKNKTSESSGYTSDAGVAMCAKMREKL 640
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,772
Number of Sequences: 27780
Number of extensions: 248899
Number of successful extensions: 1199
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -