Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    32   0.12 
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    28   1.9  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   1.9  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   3.4  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 24/71 (33%), Positives = 31/71 (43%)
 Frame = -1

Query: 817 TGLDKIIGAHFGKAFTGRSWNTSLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKA 638
           T    ++GA FG       W  S +  C   V    VMT   AC  F+  ++SMA  P  
Sbjct: 449 TRFSLVVGAPFGTITGVVCWLASTYSFCDGIVNKDTVMTS-KAC--FVGNIVSMASSPLY 505

Query: 637 KVFRSHPWPSK 605
            V  S+ WP K
Sbjct: 506 IVLLSYIWPDK 516


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 338 PRRSRTSSKADTTSSGTSKTASEETVNVMKNKR-TEKVFFVAISL 207
           PR+ R     D+TS G + TA+E    +M+ +  ++K+ + A+ +
Sbjct: 449 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDM 493


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -1

Query: 745 FLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVGCS 566
           F+  L+  +       +AAC++    VL+ ++  K K  R  P   +     L    GC+
Sbjct: 120 FMYALIPRLSFLESLAIAACITATDPVLASSIVGKGKFARRVPGHLR---NMLLAESGCN 176

Query: 565 FGYMFPFMYTPAY 527
            G   PF+Y   Y
Sbjct: 177 DGMAIPFLYLAIY 189


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -3

Query: 389 YNACSHGHCFSIWKWNYPRRSRTSSKADTTSSGTSKTASEETVNVMKNKRTEKVFFVAI 213
           Y+A   G   + W WN+    R    AD       +T   + V ++     +K ++V I
Sbjct: 568 YHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNI 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,046
Number of Sequences: 5004
Number of extensions: 69050
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)