Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b02
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195...    29   3.5  
10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127     29   6.2  
10_08_0604 + 19152363-19152731,19152773-19153514,19153926-191540...    29   6.2  
07_03_0030 - 12623238-12623396,12623494-12623687,12624228-126243...    29   6.2  
12_02_0045 + 12824766-12825417,12826608-12826753,12826825-128269...    28   8.2  
09_04_0436 - 17558603-17559265,17559322-17559384                       28   8.2  
03_01_0048 - 409557-409825,409921-411004                               28   8.2  
04_03_0904 + 20717005-20718087                                         24   9.4  

>02_01_0293 +
           1955439-1956457,1957002-1957322,1957405-1957411,
           1957954-1958041,1958143-1958324,1958508-1958644,
           1958790-1958856,1959132-1959246,1959390-1959501,
           1960420-1960495,1960576-1960758,1961166-1961326,
           1961463-1961532,1962721-1962928,1963015-1963304,
           1963388-1963509,1963605-1963749,1964040-1964113,
           1964464-1964911
          Length = 1274

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -3

Query: 362 FSIWKWNYPRRSRTSSKADTTSSGTSKTASEETVNVMKNKRTEKVFFVAI 213
           F++ +W  P   R    A +  S TSK  S E         T + F  A+
Sbjct: 615 FTVLEWTLPSAPRPGQNAASKQSSTSKERSAEATGAESTDETSESFAFAL 664


>10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127
          Length = 485

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 790 HFGKAFTGRSWNTSLFL--VCLVTVIFANVMTGVAACVSFLPFVLSMAVE 647
           H G+    RS      +  VC+VT + + + T    CV    FVL +A E
Sbjct: 87  HLGRLLAWRSQGGRDLMCRVCVVTALASALFTNDTCCVVLTEFVLELAAE 136


>10_08_0604 +
           19152363-19152731,19152773-19153514,19153926-19154005,
           19154155-19154487
          Length = 507

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 621 WLRKTFALGSTAILKTNGRKETQAATPVMTFANMTVTKHTRNNDVFQDRP 770
           W  KT A+   A+L+  G +     T V+    + V    R  D F DRP
Sbjct: 34  WPWKTAAISREAVLRLLGVRLGDVPTTVVRDGAVAVDALVRRADAFSDRP 83


>07_03_0030 -
           12623238-12623396,12623494-12623687,12624228-12624332,
           12625328-12625392,12626151-12626350,12626466-12626604,
           12626677-12626804,12630145-12630369,12630461-12630670
          Length = 474

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 685 VSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGV 575
           +SF     S+A++P++ +F +     K+YV A+G+ V
Sbjct: 247 ISFPSITDSVALDPRSHIFYAGGRDGKIYVTAMGIDV 283


>12_02_0045 +
           12824766-12825417,12826608-12826753,12826825-12826935,
           12827854-12828441
          Length = 498

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 588 SAPTYTLDGHGWLRKTFALGSTAILKTNGRKETQAATPVMTFANMTVTKHTRNNDVFQDR 767
           S  T TLD  G  R   A G++  ++ +G    +A TP +   +    + + ++     R
Sbjct: 63  SCATCTLDNPGHSRACDACGNSRPVEVDGDAVAKAQTPTLPTMSTPPARASTSSGCGAGR 122

Query: 768 -PVKALPKCAPIILSNP 815
            P +    CA   L NP
Sbjct: 123 PPTERKWSCAACTLDNP 139


>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 599 CWCARRWCWLFVWL 558
           CWCA RW WL  WL
Sbjct: 102 CWCAWRWRWL-QWL 114


>03_01_0048 - 409557-409825,409921-411004
          Length = 450

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 790 HFGK--AFTGRSWNTSLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVE 647
           H G+  A+  +     +  VC+VT + + + T    CV    FVL +A E
Sbjct: 66  HLGRLLAWKSQGGRDLMCRVCVVTALASALFTNDTCCVVLTEFVLELAAE 115


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 23.8 bits (49), Expect(2) = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 573 PTPTPSAPTYT 605
           P PTP+ PTYT
Sbjct: 328 PKPTPTPPTYT 338



 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 561 PNEQPTPTPSAPT 599
           P   PTPTP  PT
Sbjct: 281 PKPTPTPTPYTPT 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,026
Number of Sequences: 37544
Number of extensions: 411091
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)