Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b02
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035966-1|AAH35966.1| 602|Homo sapiens solute carrier family 1... 38 0.061
AY072810-1|AAL66762.1| 602|Homo sapiens energy metabolism-relat... 38 0.061
AL133520-2|CAI18891.1| 602|Homo sapiens solute carrier family 1... 38 0.061
AL034424-2|CAI42503.1| 602|Homo sapiens solute carrier family 1... 38 0.061
AK096658-1|BAC04834.1| 520|Homo sapiens protein ( Homo sapiens ... 38 0.061
AK056713-1|BAB71262.1| 602|Homo sapiens protein ( Homo sapiens ... 38 0.061
AF154121-1|AAF73251.1| 602|Homo sapiens sodium-dependent high-a... 38 0.061
AF217972-1|AAG17215.1| 139|Homo sapiens unknown protein. 35 0.43
AF217965-1|AAG17208.1| 139|Homo sapiens unknown protein. 35 0.43
AK091954-1|BAC03776.1| 174|Homo sapiens protein ( Homo sapiens ... 31 4.0
>BC035966-1|AAH35966.1| 602|Homo sapiens solute carrier family 13
(sodium-dependent dicarboxylate transporter), member 3
protein.
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AY072810-1|AAL66762.1| 602|Homo sapiens energy metabolism-related
sodium-dependent high-affinity dicarboxylate transpor
protein.
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AL133520-2|CAI18891.1| 602|Homo sapiens solute carrier family 13
(sodium-dependent dicarboxylate transporter), member 3
protein.
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AL034424-2|CAI42503.1| 602|Homo sapiens solute carrier family 13
(sodium-dependent dicarboxylate transporter), member 3
protein.
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AK096658-1|BAC04834.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ39339 fis, clone OCBBF2018012, highly similar to
Homo sapiens sodium-dependent high-affinity
dicarboxylate ).
Length = 520
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 385 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 434
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 435 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 464
>AK056713-1|BAB71262.1| 602|Homo sapiens protein ( Homo sapiens
cDNA FLJ32151 fis, clone PLACE5000172, highly similar to
Homo sapiens sodium-dependent high-affinity
dicarboxylate ).
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AF154121-1|AAF73251.1| 602|Homo sapiens sodium-dependent
high-affinity dicarboxylate transporter protein.
Length = 602
Score = 37.5 bits (83), Expect = 0.061
Identities = 25/90 (27%), Positives = 40/90 (44%)
Frame = -1
Query: 751 SLFLVCLVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVG 572
++ L+ +V F + A + FLP + +A+ R HP +Y+ G VG
Sbjct: 467 AVLLITVVIAFFTEFASNTATIIIFLPVLAELAIR-----LRVHP----LYLMIPGT-VG 516
Query: 571 CSFGYMFPFMYTPAYFCHYTGKVPVKKMAK 482
CSF +M P P +G + VK M +
Sbjct: 517 CSFAFMLPVSTPPNSIAFASGHLLVKDMVR 546
>AF217972-1|AAG17215.1| 139|Homo sapiens unknown protein.
Length = 139
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 806 QDYRCTFWQSFYGSILEYIIVPCMFSDCHICECHDWCSCLCFFS 675
Q + TFW Y LE VP M + C +C C C C+C FS
Sbjct: 92 QPLKGTFWSLQYLQGLETANVPLMGNPC-VCVCVCVCVCVCVFS 134
>AF217965-1|AAG17208.1| 139|Homo sapiens unknown protein.
Length = 139
Score = 34.7 bits (76), Expect = 0.43
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 806 QDYRCTFWQSFYGSILEYIIVPCMFSDCHICECHDWCSCLCFFS 675
Q + TFW Y LE VP M + C +C C C C+C FS
Sbjct: 92 QPLKGTFWSLQYLQGLETANVPLMGNPC-VCVCVCVCVCVCVFS 134
>AK091954-1|BAC03776.1| 174|Homo sapiens protein ( Homo sapiens
cDNA FLJ34635 fis, clone KIDNE2016096. ).
Length = 174
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = -3
Query: 752 IIVPCMFSDCHICECHDWCSCLCFFSTICFEYGC*T*GKGFPEPSMAV*GVCWCARRWCW 573
++ C+ + C D CSC+C F +C C A VC CA W
Sbjct: 9 VVYMCVSVPVCVYVC-DVCSCVCIFRQVCI---C------------ACQCVCMCAYGHAW 52
Query: 572 LFVWLHVPFYVYTC 531
+W H+ ++ TC
Sbjct: 53 TRIWTHMDTHMDTC 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,052,342
Number of Sequences: 237096
Number of extensions: 2438729
Number of successful extensions: 6149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6144
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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