Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b02
         (850 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069390-1|AAL39535.1|  300|Drosophila melanogaster LD09836p pro...    31   2.6  
AE014297-276|AAF52007.2|  300|Drosophila melanogaster CG12746-PA...    31   2.6  
AY121620-1|AAM51947.1| 1353|Drosophila melanogaster GH06739p pro...    29   8.1  
AE013599-2803|AAF57611.2| 1353|Drosophila melanogaster CG15105-P...    29   8.1  
AE013599-2802|AAF57612.2| 1353|Drosophila melanogaster CG15105-P...    29   8.1  

>AY069390-1|AAL39535.1|  300|Drosophila melanogaster LD09836p
           protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -1

Query: 733 LVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVGCSFGYM 554
           LVT+ F         C++ +P  +++ V         H W   V +G L   +G   GY+
Sbjct: 179 LVTIAFYWYTRDRRLCIAVIPLFIALLVAVSRTCDYHHHW-QDVTIGGL---IGLFAGYI 234

Query: 553 FPFMYTPAYFCHYTG 509
               Y P+ FC   G
Sbjct: 235 SYTQYYPSIFCPDAG 249


>AE014297-276|AAF52007.2|  300|Drosophila melanogaster CG12746-PA,
           isoform A protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -1

Query: 733 LVTVIFANVMTGVAACVSFLPFVLSMAVEPKAKVFRSHPWPSKVYVGALGVGVGCSFGYM 554
           LVT+ F         C++ +P  +++ V         H W   V +G L   +G   GY+
Sbjct: 179 LVTIAFYWYTRDRRLCIAVIPLFIALLVAVSRTCDYHHHW-QDVTIGGL---IGLFAGYI 234

Query: 553 FPFMYTPAYFCHYTG 509
               Y P+ FC   G
Sbjct: 235 SYTQYYPSIFCPDAG 249


>AY121620-1|AAM51947.1| 1353|Drosophila melanogaster GH06739p
           protein.
          Length = 1353

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 329 SRTSSKADTTSSGTSKTASEETVNVMKNKRTEK 231
           S T   A +TSSG   TAS++ V  +KN+  E+
Sbjct: 515 SSTGGAATSTSSGGGDTASDQRVAALKNRGGEE 547


>AE013599-2803|AAF57611.2| 1353|Drosophila melanogaster CG15105-PB,
           isoform B protein.
          Length = 1353

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 329 SRTSSKADTTSSGTSKTASEETVNVMKNKRTEK 231
           S T   A +TSSG   TAS++ V  +KN+  E+
Sbjct: 515 SSTGGAATSTSSGGGDTASDQRVAALKNRGGEE 547


>AE013599-2802|AAF57612.2| 1353|Drosophila melanogaster CG15105-PA,
           isoform A protein.
          Length = 1353

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 329 SRTSSKADTTSSGTSKTASEETVNVMKNKRTEK 231
           S T   A +TSSG   TAS++ V  +KN+  E+
Sbjct: 515 SSTGGAATSTSSGGGDTASDQRVAALKNRGGEE 547


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,729,851
Number of Sequences: 53049
Number of extensions: 742911
Number of successful extensions: 2172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2172
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)