Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b02
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-1|CAA78468.2|  551|Caenorhabditis elegans Hypothetical pr...    32   0.59 
AY090486-1|AAM11895.1|  551|Caenorhabditis elegans high-affinity...    32   0.59 
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    28   9.6  

>Z14092-1|CAA78468.2|  551|Caenorhabditis elegans Hypothetical
           protein R107.1 protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 30/112 (26%), Positives = 45/112 (40%)
 Frame = -1

Query: 838 LQAAIQDTGLDKIIGAHFGKAFTGRSWNTSLFLVCLVTVIFANVMTGVAACVSFLPFVLS 659
           +   +  +GL ++I       F G S       V  + VI     + V+    F+P  L 
Sbjct: 397 ISEGVDKSGLSRLISCGMKNIFVGMSSLPLQLTVTTIIVIMTEFASNVSTGSIFIPISLG 456

Query: 658 MAVEPKAKVFRSHPWPSKVYVGALGVGVGCSFGYMFPFMYTPAYFCHYTGKV 503
           +     A+    HP    +Y+ AL   V CSF +M P + TP     Y  KV
Sbjct: 457 V-----AESMGVHP----LYL-ALPTTVACSFAFMLP-ISTPPNAVVYDTKV 497


>AY090486-1|AAM11895.1|  551|Caenorhabditis elegans high-affinity
           dicarboxylate transporterINDY3 protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 30/112 (26%), Positives = 45/112 (40%)
 Frame = -1

Query: 838 LQAAIQDTGLDKIIGAHFGKAFTGRSWNTSLFLVCLVTVIFANVMTGVAACVSFLPFVLS 659
           +   +  +GL ++I       F G S       V  + VI     + V+    F+P  L 
Sbjct: 397 ISEGVDKSGLSRLISCGMKNIFVGMSSLPLQLTVTTIIVIMTEFASNVSTGSIFIPISLG 456

Query: 658 MAVEPKAKVFRSHPWPSKVYVGALGVGVGCSFGYMFPFMYTPAYFCHYTGKV 503
           +     A+    HP    +Y+ AL   V CSF +M P + TP     Y  KV
Sbjct: 457 V-----AESMGVHP----LYL-ALPTTVACSFAFMLP-ISTPPNAVVYDTKV 497


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 627 RKTFALGSTAILKTNGRKETQAATPVMTFANMTVTKHTRNNDVFQDRPVKALPKCAPIIL 806
           R    +GST  +  +GR +T AA+P + + N+ V        +         P   P  L
Sbjct: 435 RNRALVGSTKNINLSGRSDTPAASPSVFYVNINVKVENPTPVIVDGARPPPSPPALPPAL 494

Query: 807 SNP 815
            NP
Sbjct: 495 PNP 497


>U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical
           protein T12A2.3 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 338 PRRSRTSSKADTTSSGTSKTASEETVNVMKNKRT 237
           P+RSR+      ++S +S ++SE + ++  +KRT
Sbjct: 82  PKRSRSPGSTSPSASNSSSSSSELSFDMFSSKRT 115


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 582 TPSAPTYTLDGHGWLRKTFALGSTAILKTNGRKETQAAT-PVMTF 713
           TP++ +  +  HGW +    L +T IL+    KE      P MTF
Sbjct: 620 TPNSKSGVIGVHGWSQNAIQLFATQILEIMSPKEFSTENCPEMTF 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,698,521
Number of Sequences: 27780
Number of extensions: 394522
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)