Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b02
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 14  MKLVS*TKNKYPVLLEHIDEITDKK*FTWA---SSFLTNVLW 130
           MK  S T + + V L HIDEI  K         S F T+V W
Sbjct: 165 MKFGSWTYDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEW 206


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 797 RCTFWQSFYGSILEYIIVPCMFSDCHICECH 705
           RCTF+      I  Y + P M   C+ C+ H
Sbjct: 6   RCTFFFLSVILITSYFVTPTMSIKCN-CKRH 35


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 559 NQTNNQHQRLAH 594
           NQ NNQH   AH
Sbjct: 440 NQNNNQHNDQAH 451


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LNYQSFIYKNNEIATKKTFSVRLFFI 255
           +NY+ F YK N  + K+T  +   F+
Sbjct: 496 MNYERFTYKININSDKETKGMMRIFL 521


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LNYQSFIYKNNEIATKKTFSVRLFFI 255
           +NY+ F YK N  + K+T  +   F+
Sbjct: 496 MNYERFTYKININSDKETKGMMRIFL 521


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 163 NSINGLNYQSFIYKNNEIATKKTFSVRLFFI 255
           N+ N  NY ++ Y NN     K     + +I
Sbjct: 94  NNYNNNNYNNYNYNNNNYNNYKKLYYNINYI 124


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 597  TYTLDGHGWLRKT 635
            TYTLDG G + KT
Sbjct: 1227 TYTLDGVGSVEKT 1239


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 616 WPSKVYVGALGVGV 575
           +PS V V ALGVGV
Sbjct: 223 YPSSVQVIALGVGV 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,987
Number of Sequences: 438
Number of extensions: 5183
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)