Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15b01
         (780 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X53793-1|CAA37801.1|  425|Homo sapiens ADE2H1 protein.                239   6e-63
BT006988-1|AAP35634.1|  425|Homo sapiens phosphoribosylaminoimid...   239   6e-63
BC019255-1|AAH19255.1|  425|Homo sapiens phosphoribosylaminoimid...   239   6e-63
BC010273-1|AAH10273.1|  425|Homo sapiens phosphoribosylaminoimid...   239   6e-63
BC050477-1|AAH50477.1|  904|Homo sapiens zinc finger protein 598...    30   8.1  
BC041015-1|AAH41015.1|  523|Homo sapiens ZNF598 protein protein.       30   8.1  

>X53793-1|CAA37801.1|  425|Homo sapiens ADE2H1 protein.
          Length = 425

 Score =  239 bits (586), Expect = 6e-63
 Identities = 117/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)
 Frame = -3

Query: 778 WRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFMG 602
           WRLWPSGD+    DKQ YR+L  VT   L  VK+NF WV ++++ L K     +VVV MG
Sbjct: 214 WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMG 273

Query: 601 SPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSN 422
           S +D  HC+KI KA    G+  +LRVTSAHK  +ETLRI  +YE      VF+AVAGRSN
Sbjct: 274 STSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN 333

Query: 421 GLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGL 245
           GLGPV+SGNT+YPVI+CPP   D  VQD+WSSL +PSGLGC+TV+ P+ +A  AAQI GL
Sbjct: 334 GLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGL 393

Query: 244 QDYLVWGRLRSKQLDMAHSLRQADKKLR 161
            ++LVW +LR+  L+   SL+QADKK+R
Sbjct: 394 SNHLVWSKLRASILNTWISLKQADKKIR 421


>BT006988-1|AAP35634.1|  425|Homo sapiens
           phosphoribosylaminoimidazole carboxylase,
           phosphoribosylaminoimidazole succinoc protein.
          Length = 425

 Score =  239 bits (586), Expect = 6e-63
 Identities = 117/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)
 Frame = -3

Query: 778 WRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFMG 602
           WRLWPSGD+    DKQ YR+L  VT   L  VK+NF WV ++++ L K     +VVV MG
Sbjct: 214 WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMG 273

Query: 601 SPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSN 422
           S +D  HC+KI KA    G+  +LRVTSAHK  +ETLRI  +YE      VF+AVAGRSN
Sbjct: 274 STSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN 333

Query: 421 GLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGL 245
           GLGPV+SGNT+YPVI+CPP   D  VQD+WSSL +PSGLGC+TV+ P+ +A  AAQI GL
Sbjct: 334 GLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGL 393

Query: 244 QDYLVWGRLRSKQLDMAHSLRQADKKLR 161
            ++LVW +LR+  L+   SL+QADKK+R
Sbjct: 394 SNHLVWSKLRASILNTWISLKQADKKIR 421


>BC019255-1|AAH19255.1|  425|Homo sapiens
           phosphoribosylaminoimidazole carboxylase,
           phosphoribosylaminoimidazole succinoc protein.
          Length = 425

 Score =  239 bits (586), Expect = 6e-63
 Identities = 117/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)
 Frame = -3

Query: 778 WRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFMG 602
           WRLWPSGD+    DKQ YR+L  VT   L  VK+NF WV ++++ L K     +VVV MG
Sbjct: 214 WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMG 273

Query: 601 SPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSN 422
           S +D  HC+KI KA    G+  +LRVTSAHK  +ETLRI  +YE      VF+AVAGRSN
Sbjct: 274 STSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN 333

Query: 421 GLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGL 245
           GLGPV+SGNT+YPVI+CPP   D  VQD+WSSL +PSGLGC+TV+ P+ +A  AAQI GL
Sbjct: 334 GLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGL 393

Query: 244 QDYLVWGRLRSKQLDMAHSLRQADKKLR 161
            ++LVW +LR+  L+   SL+QADKK+R
Sbjct: 394 SNHLVWSKLRASILNTWISLKQADKKIR 421


>BC010273-1|AAH10273.1|  425|Homo sapiens
           phosphoribosylaminoimidazole carboxylase,
           phosphoribosylaminoimidazole succinoc protein.
          Length = 425

 Score =  239 bits (586), Expect = 6e-63
 Identities = 117/208 (56%), Positives = 148/208 (71%), Gaps = 2/208 (0%)
 Frame = -3

Query: 778 WRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKDQLDFL-KPTIHHKVVVFMG 602
           WRLWPSGD+    DKQ YR+L  VT   L  VK+NF WV ++++ L K     +VVV MG
Sbjct: 214 WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMG 273

Query: 601 SPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSN 422
           S +D  HC+KI KA    G+  +LRVTSAHK  +ETLRI  +YE      VF+AVAGRSN
Sbjct: 274 STSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN 333

Query: 421 GLGPVLSGNTSYPVINCPP-PSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGL 245
           GLGPV+SGNT+YPVI+CPP   D  VQD+WSSL +PSGLGC+TV+ P+ +A  AAQI GL
Sbjct: 334 GLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGL 393

Query: 244 QDYLVWGRLRSKQLDMAHSLRQADKKLR 161
            ++LVW +LR+  L+   SL+QADKK+R
Sbjct: 394 SNHLVWSKLRASILNTWISLKQADKKIR 421


>BC050477-1|AAH50477.1|  904|Homo sapiens zinc finger protein 598
           protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 415 GPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAAL 269
           GP   G    P    PPPS KL  + + SLS  +   C+T   P    L
Sbjct: 420 GPAAPGCVGVPGA-LPPPSPKLKDEDFPSLSASTSSSCSTAATPGPVGL 467


>BC041015-1|AAH41015.1|  523|Homo sapiens ZNF598 protein protein.
          Length = 523

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 415 GPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAAL 269
           GP   G    P    PPPS KL  + + SLS  +   C+T   P    L
Sbjct: 39  GPAAPGCVGVPGA-LPPPSPKLKDEDFPSLSASTSSSCSTAATPGPVGL 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,831,612
Number of Sequences: 237096
Number of extensions: 2909807
Number of successful extensions: 5376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5368
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)