Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15b01
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-3|AAA80690.1| 423|Caenorhabditis elegans Hypothetical pr... 196 1e-50
AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical... 32 0.53
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.92
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 29 4.9
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 29 4.9
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 8.6
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 8.6
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 8.6
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 8.6
AF016438-13|AAK84531.2| 402|Caenorhabditis elegans Nuclear horm... 28 8.6
AF014940-8|AAY43994.1| 356|Caenorhabditis elegans Hypothetical ... 28 8.6
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 8.6
>U39848-3|AAA80690.1| 423|Caenorhabditis elegans Hypothetical
protein B0286.3 protein.
Length = 423
Score = 196 bits (479), Expect = 1e-50
Identities = 95/206 (46%), Positives = 138/206 (66%), Gaps = 1/206 (0%)
Frame = -3
Query: 778 WRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWVKD-QLDFLKPTIHHKVVVFMG 602
WR+WP D+RL +DKQVYR++ VT L V +N+ V D F K V+V MG
Sbjct: 217 WRVWPENDRRLQLDKQVYRDMKEVTEEGLALVLKNYTKVMDITATFSKHQQKCHVLVIMG 276
Query: 601 SPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFIAVAGRSN 422
S +D +KI+ A++ GL+ L+V+SAHK T +TL ++ +E++ V IAVAGRSN
Sbjct: 277 SGSDGVFARKISDEAKKFGLETTLKVSSAHKTTSDTLEVIADFEESGVPTVVIAVAGRSN 336
Query: 421 GLGPVLSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYPDSAALMAAQIIGLQ 242
GLGPV++GN+S PVINCPPPS+ DIWSSL +P+G+GC TV+ P AAL AA+I+
Sbjct: 337 GLGPVIAGNSSLPVINCPPPSESTSLDIWSSLRMPNGIGCTTVLDPSEAALAAAKILASH 396
Query: 241 DYLVWGRLRSKQLDMAHSLRQADKKL 164
+++V+G++ + QL ++ A++KL
Sbjct: 397 NHIVFGKVLTAQLKNQINIYNANRKL 422
>AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical
protein Y82E9BR.23 protein.
Length = 257
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 214 SKQLDMAHSLRQADKKLRNQTA*CITKYKMKNNMQVPRLVGRTIN 80
S+ LD HS R D + + + CI +K+KN +V L + IN
Sbjct: 97 SEYLDKEHSSRIRDLETKKRN--CIANFKLKNKKEVEELFAKLIN 139
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 610 RRQLCGGSSASRNQAGLSPKQSCV*LCLDQLQSPL*GSGTPVCQ 741
RRQ CG SS+S + S C+ +C+ Q QS TP+CQ
Sbjct: 31 RRQCCGRSSSSCCSSS-SSNSYCIPVCMAQCQS---SCTTPICQ 70
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -3
Query: 667 WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 500
W++D +KPTI V+ M A + C ++ + R + L+V+ + +
Sbjct: 860 WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 919
Query: 499 ETLRIMQQYEDTHGALV 449
+ R+M+QY + LV
Sbjct: 920 QMTRMMEQYANNLEKLV 936
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -3
Query: 667 WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 500
W++D +KPTI V+ M A + C ++ + R + L+V+ + +
Sbjct: 806 WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 865
Query: 499 ETLRIMQQYEDTHGALV 449
+ R+M+QY + LV
Sbjct: 866 QMTRMMEQYANNLEKLV 882
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 362 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 499
R W R+ +V RK P S Y+N ++ ++F L K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 362 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 499
R W R+ +V RK P S Y+N ++ ++F L K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 362 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 499
R W R+ +V RK P S Y+N ++ ++F L K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 362 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 499
R W R+ +V RK P S Y+N ++ ++F L K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410
>AF016438-13|AAK84531.2| 402|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 96 protein.
Length = 402
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -3
Query: 625 HKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVF 446
H + F+G P+ HC+ + + +DV V A K E+ I + + + +L
Sbjct: 102 HSMSTFLGRPSFLLHCEPELASHSKTIIDVSYLVDVARKIFEKDATISHKSSNYYNSLEL 161
Query: 445 IAVA 434
+ +A
Sbjct: 162 LTLA 165
>AF014940-8|AAY43994.1| 356|Caenorhabditis elegans Hypothetical
protein W02D7.2 protein.
Length = 356
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 76 RKNNHIFTKNNEMFYKYHECCLF 8
RK +H T NNE +KY C F
Sbjct: 202 RKYHHFITSNNETTHKYGTCVQF 224
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 362 RRWAVDDRVGSVPRKNGPESVRSSCYSNEHESTMRIFILLHNAKGF 499
R W R+ +V RK P S Y+N ++ ++F L K F
Sbjct: 365 RDWHTTKRIANVVRKQAPFLKMYSEYTNNYDRATKLFEELKKKKKF 410
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,210,557
Number of Sequences: 27780
Number of extensions: 445989
Number of successful extensions: 1076
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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