Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a24
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 205 4e-54
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 161 7e-41
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 157 1e-39
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 146 3e-36
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 128 7e-31
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 111 1e-25
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 96 4e-21
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 72 9e-14
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 60 4e-10
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.9
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 5.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 25 7.8
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 205 bits (501), Expect = 4e-54
Identities = 100/162 (61%), Positives = 116/162 (71%)
Frame = -3
Query: 671 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 492
+GPKVT V FD++ GD+ +G + IGLFGKTVPKT ENF LA +G GY+GS FHRVI
Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80
Query: 491 KNFMIQXXXXXXXXXXXGRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 312
NFMIQ G+SIYG RF DENFKL H G LSMANAG D+NGSQFFITTV
Sbjct: 81 PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140
Query: 311 KTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 186
KTPWLDG HVVFG+VL G D+V+KI T D+P++DV I
Sbjct: 141 KTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKI 182
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 161 bits (392), Expect = 7e-41
Identities = 83/154 (53%), Positives = 98/154 (63%)
Frame = -3
Query: 641 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXX 462
FD+ +G IV LF VPKT NF L +G GY GS FHRVI FM+Q
Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65
Query: 461 XXXXXXXGRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHV 282
G+SIYGE+F DENF LKH G LSMANAG +TNGSQFFITTV TPWLDG+HV
Sbjct: 66 TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHV 125
Query: 281 VFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISD 180
VFG+V EGMDVV+K+E G+N + ++ D
Sbjct: 126 VFGEVTEGMDVVKKVES--LGSNSGATRARIVID 157
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 157 bits (381), Expect = 1e-39
Identities = 95/181 (52%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Frame = -3
Query: 650 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 483
K+S D KI TI LF VPKT +NF L E +G YKGS+FHRVIKNF
Sbjct: 8 KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63
Query: 482 MIQXXXXXXXXXXXGRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 303
M+Q G SIYGE+FEDENF+LKH LSMANAG +TNGSQFFITTV TP
Sbjct: 64 MLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123
Query: 302 WLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISD----TKTEVVAEPFSVTKE 135
LDG+HVVFGKV++G V+ IE T ND PV VVI + TK ++ A VT +
Sbjct: 124 HLDGKHVVFGKVIQGKSTVRTIENLET-KNDDPVVPVVIEECGTCTKDQIEAPKPDVTGD 182
Query: 134 S 132
S
Sbjct: 183 S 183
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 146 bits (353), Expect = 3e-36
Identities = 83/163 (50%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Frame = -3
Query: 647 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 492
V D+ I +G I I LF VPKT ENF Q QKP G YK S FHR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64
Query: 491 KNFMIQXXXXXXXXXXXGRSIYGER-FEDENFKLKHYGAGWLSMANAGKDTNGSQFFITT 315
+ FMIQ +I+ R F DENF LKH G LSMANAGKD+NG QFFITT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 314 VKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVI 186
V +LDG+HVVFG+V+EG D+V++IE T GAN RP +V I
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAI 167
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 128 bits (309), Expect = 7e-31
Identities = 67/145 (46%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Frame = -3
Query: 617 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXG 438
++G I+I L+ + PKT +NF+ LA+ EG Y G FHRVI +F+IQ
Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65
Query: 437 RSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLE 261
SIYG++F+DE + L H GAG LSMANAG +TN SQFFIT TPWLDG+H +FG+V+
Sbjct: 66 -SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVS 124
Query: 260 GMDVVQKIEMTVTGANDRPVKDVVI 186
G+ V +++ + T ++DRP++ + I
Sbjct: 125 GLSVCKRMGLIRTDSSDRPIEPLKI 149
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 111 bits (266), Expect = 1e-25
Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Frame = -3
Query: 611 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXGRS 432
G I I L+ + PK +NF A E Y + FHR+IKNFMIQ S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGDPLGDGTGG-ES 519
Query: 431 IYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 255
I+ + FEDE + LKH +SMAN+G +TNGSQFFITT TPWLDG+H +F + G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579
Query: 254 DVVQKIEMTVTGANDRPVKDVVI 186
DVV +IE T DRP++ I
Sbjct: 580 DVVHRIEQGETDKYDRPLEPTKI 602
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 96.3 bits (229), Expect = 4e-21
Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Frame = -3
Query: 617 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXG 438
N G I I L P NF QLA++ Y+ + FHR I FMIQ
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGDPSGTGRGG- 338
Query: 437 RSIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLE 261
+SI+G+ F+DE LKH G +SMAN GK+TNGSQFFI LD +H +FG+V+
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVG 398
Query: 260 GMDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPFSVTKE 135
G++V+ +E T +ND P + + D + +PF K+
Sbjct: 399 GLNVLDALEKVPTNSNDHPKLPIKLED--IIIFVDPFEEWKK 438
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 71.7 bits (168), Expect = 9e-14
Identities = 59/160 (36%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Frame = -3
Query: 611 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXGRS 432
G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQ S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGG-ES 77
Query: 431 IYGERFEDENF-KLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL-EG 258
IYGE F E +L+ G + MA + N SQFFIT TP +G+ +FG+V+ +
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVVGDT 137
Query: 257 MDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPFSVTK 138
+ V +I AN RPV I TEV+ F+ K
Sbjct: 138 IYNVVRISELELDANQRPVFPPKI--ISTEVIDNYFTDIK 175
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 59.7 bits (138), Expect = 4e-10
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Frame = -3
Query: 623 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 444
+ +G +VI LF K PKT ENF +L + + Y F+ + N+ Q
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 443 XGRSIY-----GERFEDENFK--LKHYGAGWLSMANA---GKDTN----GSQFFIT-TVK 309
GR ++ G RF F L H G +SM+ A +D GSQF IT +
Sbjct: 63 GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDN 122
Query: 308 TPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPF 150
LD R+ ++G+V EG D + KI + +P +D+ I T ++ +PF
Sbjct: 123 LEGLDERYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIK--HTIILDDPF 173
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 145 TLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPKTT 285
+L TT+V+V+++ T G PVT SIF T + + T +T+
Sbjct: 460 SLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQTS 506
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 157 SATTSVFVSDITTSLTGRSFAPVTVISIFCT--TSIP---SKTLPKTTCLP 294
+++TS+ + +TS T + +P+ S CT TSIP + T P T +P
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 435 APSSSITLGKITTLDHEIFNYSVELAPFVPLPLRFLS*LKEVLSCLRYSLS 587
+PSS + L K+ LDH + + S P P +++ K+ S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -3
Query: 299 LDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKDVVISDTKTEVVAEPFSVTKESAH*I 120
L G H + G+ L +D + I TV + ++ SDT T++ T ++ +
Sbjct: 109 LSGSHTLTGEALSILDSIPSIAYTVPDLDAVVTINIYESDTNTQLAC--VRTTVQNGRSV 166
Query: 119 YNKCL 105
Y++ +
Sbjct: 167 YHRAV 171
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 139 FVTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKT 270
+ T S+ S+F T S T +PV+ S T+ +PS T
Sbjct: 75 YATPTSSSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSST 118
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 130 LTKFIINVLMINIFMRMHLLDFYVIFIYHY 41
L FII L I + + + LL+F + FI Y
Sbjct: 211 LITFIIGFLPITVLVAISLLEFGIAFIQAY 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,593
Number of Sequences: 5004
Number of extensions: 54016
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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