Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a22
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    23   5.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    22   9.7  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    22   9.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.7  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 72  LHSCCFYSLPI 104
           LHSC FY LP+
Sbjct: 6   LHSCKFYRLPL 16


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 91  IPYLFAGIGYYRYARAGRELTGSS-SGKFLTLALA 192
           +PY F G   Y +    + L  S+   K  T+A+A
Sbjct: 168 VPYFFVGCKIYDWVAGSKNLRASTIFSKETTVAIA 202


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 90  YSLPIRWNRLLQIRAGG 140
           Y+ P  WN   Q+RA G
Sbjct: 614 YNFPKAWNAFEQVRARG 630


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 132 RVSVIADSSE*VGNKNN 82
           +V +++DSSE   +KNN
Sbjct: 474 KVEIVSDSSESFAHKNN 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,780
Number of Sequences: 5004
Number of extensions: 9933
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)