Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a22
         (200 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113590-1|AAM29595.1|  705|Drosophila melanogaster RH41322p pro...    28   1.6  
AE013599-3538|AAF46952.3|  705|Drosophila melanogaster CG9882-PA...    28   1.6  
AY061002-1|AAL28550.1|  509|Drosophila melanogaster HL01677p pro...    26   6.3  
AE014134-900|AAF52234.2|  509|Drosophila melanogaster CG14031-PA...    26   6.3  

>AY113590-1|AAM29595.1|  705|Drosophila melanogaster RH41322p
           protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 24  LLKKVKTNTPN*FKILLHSCCFYSLPIRWNRLLQIRAGG*GAHGLKLR 167
           LL K+K   P   KI   S   Y+LP+ +  L +IRA      G  LR
Sbjct: 516 LLTKIKDRLPEGVKISPCSARIYALPVEFLDLHKIRAPVGSCEGFDLR 563


>AE013599-3538|AAF46952.3|  705|Drosophila melanogaster CG9882-PA
           protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 24  LLKKVKTNTPN*FKILLHSCCFYSLPIRWNRLLQIRAGG*GAHGLKLR 167
           LL K+K   P   KI   S   Y+LP+ +  L +IRA      G  LR
Sbjct: 516 LLTKIKDRLPEGVKISPCSARIYALPVEFLDLHKIRAPVGSCEGFDLR 563


>AY061002-1|AAL28550.1|  509|Drosophila melanogaster HL01677p
           protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 73  CTPVVFIPYLFAGIG-YYRYARAGRELTGSSSG 168
           C P++F  + F   G Y +Y+R  R + G SSG
Sbjct: 229 CNPLMFFNWYFFLFGDYKKYSRILRTIHGFSSG 261


>AE014134-900|AAF52234.2|  509|Drosophila melanogaster CG14031-PA
           protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 73  CTPVVFIPYLFAGIG-YYRYARAGRELTGSSSG 168
           C P++F  + F   G Y +Y+R  R + G SSG
Sbjct: 229 CNPLMFFNWYFFLFGDYKKYSRILRTIHGFSSG 261


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,007,952
Number of Sequences: 53049
Number of extensions: 97893
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 24,988,368
effective HSP length: 46
effective length of database: 22,548,114
effective search space used: 450962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)