Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a22
         (200 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 58  NLKFYCT-PVVFIPYLFAGIGYYRYA 132
           ++ F C  P++F  ++F  IGY  YA
Sbjct: 159 SIPFICVYPIIFTFFMFPAIGYCSYA 184


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 61  LKFYCTPVVFIPYL 102
           L   CTPVVF PYL
Sbjct: 67  LTILCTPVVFYPYL 80


>Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical
           protein T11G6.2b protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  TPVVFIPYLFAGIGYYRYARA 138
           TPVVFI  L A +  Y YA +
Sbjct: 333 TPVVFIMLLMATVSLYIYAHS 353


>Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical
           protein T11G6.2a protein.
          Length = 502

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  TPVVFIPYLFAGIGYYRYARA 138
           TPVVFI  L A +  Y YA +
Sbjct: 340 TPVVFIMLLMATVSLYIYAHS 360


>Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical
           protein F54C9.7 protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 72  LHSCCF-YSLPIRWNRLLQIRAG 137
           LH+C   Y   IRWN  + +R+G
Sbjct: 102 LHACRLPYKTKIRWNVYIDLRSG 124


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 66  ILLHSCCFYSLPIRWNRLLQIR 131
           ILLH C  + +PIR  R L+++
Sbjct: 14  ILLHFCLCFQVPIRSTRELRMK 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,602
Number of Sequences: 27780
Number of extensions: 51599
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)