Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a22
         (200 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   3.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 121 NSRFQRIGRE 92
           NS F+R+GRE
Sbjct: 202 NSEFRRMGRE 211


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 60  FKILLHSCC 86
           FK++L +CC
Sbjct: 359 FKLMLPNCC 367


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/18 (27%), Positives = 8/18 (44%)
 Frame = +3

Query: 75  HSCCFYSLPIRWNRLLQI 128
           H C    +P  W R + +
Sbjct: 540 HVCGVKGIPCSWGRAINV 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,602
Number of Sequences: 438
Number of extensions: 639
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)