Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a14
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.64 
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    29   0.84 
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    27   2.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.6  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   4.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   6.0  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   6.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.0  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   7.9  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 143 STFFLDCFLSFFNLAVF*GAAFELLSSAHRQDLCFGKP*LSFSQIYFQFLSSCLDYCQGK 322
           STFF   FL+ +   +     F +L  AH + +C     L+F +I   F+S    Y   K
Sbjct: 512 STFFTTIFLNTYASMISSSDLFSILG-AHFRFICS----LNFGKI--SFISHEF-YRVSK 563

Query: 323 ANWDILFFWMDLHIFQSLDTS 385
              DIL  W + ++ + LD S
Sbjct: 564 RFLDILLIWFESYLVEELDNS 584


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 656 QNKLCNPLNILLEGKVLCNCIFLSGKMNRAMDMADYYNRVGIFQSRKDTLNRNR 817
           + + C+P    +  ++  NC+  +G+   A  + + ++ V +F  RK+   RNR
Sbjct: 147 RRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLMEDHDCVALFSLRKEEHERNR 200


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 743 AMDMADYYNRVGIFQSRKDTLNRNRKPRHPPHFKEN 850
           A +++D +NR+ + +S+KD   R RK  HP     N
Sbjct: 493 ASELSDSFNRLAVNESQKD---RERKQVHPVEMGRN 525


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 126 VPGCFSCFVRRPQKPDPCIMENLTESKEN 40
           VPGCFSCF R  +K       N+TE+  N
Sbjct: 397 VPGCFSCFDRLGEK-------NITETNSN 418


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 665 LCNPLNILLEGKVLCNCIFLSGKMNRA 745
           + N   +   G+ L NCIFLS +MN A
Sbjct: 245 VANDATLSTLGRKLPNCIFLSDEMNHA 271


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 353 PSKKTKCPNLLCLGNNPDMKKEIENR 276
           PS     P+++C+   PD+KK+ + +
Sbjct: 199 PSSFLDSPSIMCVSKQPDLKKDRQRK 224


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 776 GIFQSRKDTLNRNRKPRHPPHFK 844
           GIF+  K+  N N KP H P  K
Sbjct: 135 GIFELHKNNWNANCKPSHDPEGK 157


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 162 VFCLFSIWLYF 194
           VF LFSIWLYF
Sbjct: 497 VFLLFSIWLYF 507


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 291 FLHVWIIAKAKQIGTFCFFGWIFTFSSLWTHLFRRNFRLRSSWSGTWRIVKASI 452
           ++H+++I   + + +  F  +   F S WT  F         W+  WR +  SI
Sbjct: 211 WMHIFVIIIVQILFSIPFLAY---FWSYWTQAFDFGRAFDYKWTVNWRFIPRSI 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,184
Number of Sequences: 5004
Number of extensions: 74373
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)