Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a14
(858 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT021373-1|AAX33521.1| 286|Drosophila melanogaster LP02810p pro... 33 0.66
AE013599-630|AAF59105.1| 286|Drosophila melanogaster CG11635-PA... 33 0.66
AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p pro... 31 1.5
AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-P... 31 1.5
AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-P... 31 1.5
AY058309-1|AAL13538.1| 544|Drosophila melanogaster GH07238p pro... 30 4.7
AE014298-2566|AAF48726.1| 544|Drosophila melanogaster CG5529-PA... 30 4.7
BT022495-1|AAY54911.1| 249|Drosophila melanogaster IP07934p pro... 29 6.2
AE014298-2682|AAF48808.2| 249|Drosophila melanogaster CG12611-P... 29 6.2
>BT021373-1|AAX33521.1| 286|Drosophila melanogaster LP02810p
protein.
Length = 286
Score = 32.7 bits (71), Expect = 0.66
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 638 NKKPKFEPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSC 513
NK PK PSP + P S S + P A R C HC+P + C
Sbjct: 19 NKPPK-PPSPPK-PPSSPSPPKSPSAKRECKIRTHCIPAAFC 58
>AE013599-630|AAF59105.1| 286|Drosophila melanogaster CG11635-PA
protein.
Length = 286
Score = 32.7 bits (71), Expect = 0.66
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 638 NKKPKFEPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSC 513
NK PK PSP + P S S + P A R C HC+P + C
Sbjct: 19 NKPPK-PPSPPK-PPSSPSPPKSPSAKRECKIRTHCIPAAFC 58
>AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p
protein.
Length = 872
Score = 31.5 bits (68), Expect = 1.5
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Frame = -2
Query: 716 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 543
C+CK PC PPTK + C C + N+ P P+P P S+ P C+H
Sbjct: 660 CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 711
Query: 542 LPH-----CMPPSSCFP---YLMPC 492
P CMP S+ P Y PC
Sbjct: 712 APAPVNTCCMPCSNQCPWSWYYNPC 736
>AE014296-2188|AAF49882.2| 271|Drosophila melanogaster CG17666-PB,
isoform B protein.
Length = 271
Score = 31.5 bits (68), Expect = 1.5
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Frame = -2
Query: 716 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 543
C+CK PC PPTK + C C + N+ P P+P P S+ P C+H
Sbjct: 59 CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 110
Query: 542 LPH-----CMPPSSCFP---YLMPC 492
P CMP S+ P Y PC
Sbjct: 111 APAPVNTCCMPCSNQCPWSWYYNPC 135
>AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-PA,
isoform A protein.
Length = 872
Score = 31.5 bits (68), Expect = 1.5
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Frame = -2
Query: 716 CSCKVPC--PPTKCLVDCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHH 543
C+CK PC PPTK + C C + N+ P P+P P S+ P C+H
Sbjct: 660 CNCKKPCPTPPTKEMRTC-GCSANLPEENEDP--PPAPSNPPPAPSNPPPVP-----CNH 711
Query: 542 LPH-----CMPPSSCFP---YLMPC 492
P CMP S+ P Y PC
Sbjct: 712 APAPVNTCCMPCSNQCPWSWYYNPC 736
>AY058309-1|AAL13538.1| 544|Drosophila melanogaster GH07238p
protein.
Length = 544
Score = 29.9 bits (64), Expect = 4.7
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 584 SVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPD 450
S L KP+ A S P PPS+ P L P P R+ CS D
Sbjct: 493 SGLVKPIPAHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSD 537
>AE014298-2566|AAF48726.1| 544|Drosophila melanogaster CG5529-PA
protein.
Length = 544
Score = 29.9 bits (64), Expect = 4.7
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 584 SVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPD 450
S L KP+ A S P PPS+ P L P P R+ CS D
Sbjct: 493 SGLVKPIPAHSASASPPPRPPSTPSPTLNPGSPPGRSVDSCSQSD 537
>BT022495-1|AAY54911.1| 249|Drosophila melanogaster IP07934p
protein.
Length = 249
Score = 29.5 bits (63), Expect = 6.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 454 PIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQ 338
P ++ +L +P ELL K + + C+Q+LE H K Q
Sbjct: 208 PTGSYVLLPLPPPELLIYKRMCRLCLQQLETNPTHQKIQ 246
>AE014298-2682|AAF48808.2| 249|Drosophila melanogaster CG12611-PA
protein.
Length = 249
Score = 29.5 bits (63), Expect = 6.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 454 PIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQ 338
P ++ +L +P ELL K + + C+Q+LE H K Q
Sbjct: 208 PTGSYVLLPLPPPELLIYKRMCRLCLQQLETNPTHQKIQ 246
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,516,236
Number of Sequences: 53049
Number of extensions: 837872
Number of successful extensions: 2709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2709
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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