Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a14
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epiderm... 30 1.8
U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epiderm... 30 1.8
U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epiderm... 30 1.8
AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like ... 30 1.8
AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like ... 30 1.8
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 30 2.4
U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signaloso... 29 3.2
AC199158-7|ABO33284.1| 217|Caenorhabditis elegans Hypothetical ... 29 3.2
AC199158-3|ABO33287.1| 217|Caenorhabditis elegans Hypothetical ... 29 3.2
U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical pr... 29 4.2
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 28 9.8
>U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform b protein.
Length = 772
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 713 SCKVPCPPTKCLVDC 669
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 713 SCKVPCPPTKCLVDC 669
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform c protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 713 SCKVPCPPTKCLVDC 669
S ++PCPPT CL DC
Sbjct: 465 SREIPCPPTFCLTDC 479
>AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like
protein ZEN-4b protein.
Length = 772
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 713 SCKVPCPPTKCLVDC 669
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like
protein ZEN-4a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 713 SCKVPCPPTKCLVDC 669
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 674 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 570
D T G I+ ++ KF P PV VTP+ + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 674 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 570
D T G I+ ++ KF P PV VTP+ + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 674 DCTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQK 570
D T G I+ ++ KF P PV VTP+ + QK
Sbjct: 147 DHMTAHGKSIQKQQRAKFVPVPVPVTPQEKIIPQK 181
>U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signalosome
subunit protein 2 protein.
Length = 495
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 644 KLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCH 546
K + KP P T +SS+LQ P A SCH
Sbjct: 435 KSDSKPGTSSEPSTTTSVTSSILQGPPATSSCH 467
>AC199158-7|ABO33284.1| 217|Caenorhabditis elegans Hypothetical
protein AC8.11 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 650 KIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARS 552
KI + +F PSP V PR S +LQ PL S
Sbjct: 134 KINTRSQKRFSPSPSPVRPRKSMILQ-PLLKNS 165
>AC199158-3|ABO33287.1| 217|Caenorhabditis elegans Hypothetical
protein AC8.4 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 650 KIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARS 552
KI + +F PSP V PR S +LQ PL S
Sbjct: 134 KINTRSQKRFSPSPSPVRPRKSMILQ-PLLKNS 165
>U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical
protein F59A6.10 protein.
Length = 155
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Frame = -2
Query: 617 PSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPA-RAGAPCSHPDRCF 441
P P P + + P+ A C + C P C + PC + + A C P+ F
Sbjct: 38 PGPCVKPPCRTILACLPVEANGCARM-ECSAPKVCVERVRPCIGRSCKEIATCETPNSTF 96
Query: 440 HNXXXXXXXXXXXXXXPEEMCPETGKCEDPSKKTKCPNLL 321
+CP + KCE + K C +
Sbjct: 97 P-LSVYYINFENYSACAAVVCPPSQKCELENGKPSCKKFI 135
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm receptor
protein 138 protein.
Length = 328
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 261 LAFPKS-IFNFFLHVWIIAKA-KQIGTFCFFGWIFTFSSL 374
+ FP + I N L + I+ KA K G +C+ IFT +S+
Sbjct: 10 VGFPSAQITNLILLILIVKKAYKMFGQYCYVMTIFTINSI 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,994
Number of Sequences: 27780
Number of extensions: 432363
Number of successful extensions: 1547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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