Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a14
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 587 SSVLQKPLAARSCHHLPHCMPPSSCF 510
           SS  QK L +  C H    MP   CF
Sbjct: 58  SSYFQKLLLSNPCKHPTIIMPQDVCF 83


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 662 CFGLKIKLNKKPKFEPSPVEVTP 594
           CF LK K  K P F     +VTP
Sbjct: 545 CFSLKFKNKKLPVFLAEIWDVTP 567



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 846 SLKCGGCRGFLFRFSVS 796
           +L C GC+GF FR S++
Sbjct: 201 ALTCEGCKGF-FRRSIT 216


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 167 ENNPRRKLINANAPCPDALVASSEDHRN 84
           ++ PRR + ++    P ++   ++DH+N
Sbjct: 374 KSEPRRSIYSSLLRYPRSIFRQTDDHQN 401


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 779 IFQSRKDTLNRNRKPRHPPHFKE 847
           +++  +D  + ++KPR   HFK+
Sbjct: 426 VWKKGRDKKSTSKKPRRKFHFKQ 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,048
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)