Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a12
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    28   4.2  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    28   4.2  
Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a prote...    28   5.6  
AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a prote...    28   5.6  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    27   9.7  

>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 416 CSLYFGMFRVLAVYFDSIFILFYVMLFIMIPL*N----IYFAFGLDGLY 550
           C+L+   F + A + + I +LF ++   +IP+ +    IY+ FG+D  Y
Sbjct: 8   CNLFAVFFAMFACFLN-IILLFSILYLKLIPIKSSMSLIYYKFGIDAFY 55


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 140 LRNAGKACFMLQKXKVLCIEIEINDYKFQNN 232
           LRN G  CFM    ++L   IE+ +Y  +N+
Sbjct: 425 LRNIGNTCFMNAVLQMLVNNIELREYFLRNH 455


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 216 INF-KTTTFRSKTGYTIRSDKRNSIL-RVIDKI*PVEIYTRSTLCKQLHTAVI 368
           INF +   F+     T+ SD    IL +V++K+ PV+  T   +CK L  AV+
Sbjct: 26  INFVRYMNFQDHISPTL-SDMPTEILGQVLEKLKPVDQLTHLKICKSLRAAVV 77


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 378 SIKELLQYAVA----YTAYCVCRSLPVIFYLLLGVYYFVCQTVWC 256
           +IK +  +++A    +T YCV    P  F  L  + YF C  V C
Sbjct: 17  TIKRVFAFSIAIIFPFTHYCVLTKSPKSFGFLKWIIYFHCCCVTC 61


>Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical
           protein C05B5.5 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 291 RVIDKI*PVEIYTRSTLCKQLHTAVILLSNTTYSPSDLCICR-APCISACFEFWQFILIQ 467
           ++ + + P EI+  S + K +H  V +L N  ++  D+ +C     +   F+F   I++ 
Sbjct: 25  KIFEYLNPWEIFKLSRISKAIH--VTILKNKKFAVKDIDLCTDENILKFQFQFVNNIVLS 82

Query: 468 FLFY 479
           + FY
Sbjct: 83  WEFY 86


>AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a protein
           protein 30 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 291 RVIDKI*PVEIYTRSTLCKQLHTAV 365
           +V++K+ PVEI T   +C+ L TA+
Sbjct: 18  QVLEKLGPVEILTCRKVCRNLRTAI 42


>AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a protein
           protein 32 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 291 RVIDKI*PVEIYTRSTLCKQLHTAV 365
           +V++K+ PVEI T   +C+ L TA+
Sbjct: 18  QVLEKLGPVEILTCRKVCRSLRTAI 42


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 380 YDLFALRPVHMSCSLYFGMFRVLAVYFDSIFILFYVM-LFIMIPL 511
           Y L A+ PV  SCS         AV    I +L+Y+M LF+++ L
Sbjct: 86  YWLIAVFPVACSCSFIAMCVPRTAVILTCIGVLYYLMCLFVIVSL 130


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 380 YDLFALRPVHMSCSLYFGMFRVLAVYFDSIFILFYVMLFIMIPL*NI 520
           Y L +LR      S  + MF  +++Y  S+   F++ + I +PL N+
Sbjct: 679 YYLNSLRQPMSPTSFGYFMFITISIYVLSLVCAFFIAISIEVPLLNL 725


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 145 SKKSYSLKKIRPNKHGAHSLNYVIFLFVL 59
           +K+++S ++  PN H  H L +++F  ++
Sbjct: 256 AKRTFSTRRESPNLHVVHGLEFLLFFTIV 284


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 145 SKKSYSLKKIRPNKHGAHSLNYVIFLFVL 59
           +K+++S ++  PN H  H L +++F  ++
Sbjct: 256 AKRTFSTRRESPNLHVVHGLEFLLFFTIV 284


>AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.4 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 399 RRANKSYSIKELLQYAVAYTAYCVCRSLPVIFYLL 295
           R     +  K  L Y V +  Y  C +LP++FY L
Sbjct: 126 RNRGSIFKTKGRLLYIVLHYTYAFCFTLPLLFYPL 160


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 145 SKKSYSLKKIRPNKHGAHSLNYVIFLFVL 59
           +K+++S ++  PN H  H L +++F  ++
Sbjct: 256 AKRTFSTRRESPNLHVVHGLEFLLFFTIV 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,809
Number of Sequences: 27780
Number of extensions: 253707
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)